Literature DB >> 18952804

Cytoplasmic protein mobility in osmotically stressed Escherichia coli.

Michael C Konopka1, Kem A Sochacki, Benjamin P Bratton, Irina A Shkel, M Thomas Record, James C Weisshaar.   

Abstract

Facile diffusion of globular proteins within a cytoplasm that is dense with biopolymers is essential to normal cellular biochemical activity and growth. Remarkably, Escherichia coli grows in minimal medium over a wide range of external osmolalities (0.03 to 1.8 osmol). The mean cytoplasmic biopolymer volume fraction ((phi)) for such adapted cells ranges from 0.16 at 0.10 osmol to 0.36 at 1.45 osmol. For cells grown at 0.28 osmol, a similar phi range is obtained by plasmolysis (sudden osmotic upshift) using NaCl or sucrose as the external osmolyte, after which the only available cellular response is passive loss of cytoplasmic water. Here we measure the effective axial diffusion coefficient of green fluorescent protein (D(GFP)) in the cytoplasm of E. coli cells as a function of (phi) for both plasmolyzed and adapted cells. For plasmolyzed cells, the median D(GFP) (D(GFP)(m)) decreases by a factor of 70 as (phi) increases from 0.16 to 0.33. In sharp contrast, for adapted cells, D(GFP)(m) decreases only by a factor of 2.1 as (phi) increases from 0.16 to 0.36. Clearly, GFP diffusion is not determined by (phi) alone. By comparison with quantitative models, we show that the data cannot be explained by crowding theory. We suggest possible underlying causes of this surprising effect and further experiments that will help choose among competing hypotheses. Recovery of the ability of proteins to diffuse in the cytoplasm after plasmolysis may well be a key determinant of the time scale of the recovery of growth.

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Year:  2008        PMID: 18952804      PMCID: PMC2612437          DOI: 10.1128/JB.00536-08

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  38 in total

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Authors:  J M Wood
Journal:  Microbiol Mol Biol Rev       Date:  1999-03       Impact factor: 11.056

2.  Anomalous diffusion of proteins due to molecular crowding.

Authors:  Daniel S Banks; Cécile Fradin
Journal:  Biophys J       Date:  2005-08-19       Impact factor: 4.033

3.  Probing transcription factor dynamics at the single-molecule level in a living cell.

Authors:  Johan Elf; Gene-Wei Li; X Sunney Xie
Journal:  Science       Date:  2007-05-25       Impact factor: 47.728

4.  Protein mobility in the cytoplasm of Escherichia coli.

Authors:  M B Elowitz; M G Surette; P E Wolf; J B Stock; S Leibler
Journal:  J Bacteriol       Date:  1999-01       Impact factor: 3.490

Review 5.  Osmosensing and osmoregulatory compatible solute accumulation by bacteria.

Authors:  J M Wood; E Bremer; L N Csonka; R Kraemer; B Poolman; T van der Heide; L T Smith
Journal:  Comp Biochem Physiol A Mol Integr Physiol       Date:  2001-10       Impact factor: 2.320

6.  Biophysical characterization of changes in amounts and activity of Escherichia coli cell and compartment water and turgor pressure in response to osmotic stress.

Authors:  D S Cayley; H J Guttman; M T Record
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

7.  Tracer diffusion of globular proteins in concentrated protein solutions.

Authors:  N Muramatsu; A P Minton
Journal:  Proc Natl Acad Sci U S A       Date:  1988-05       Impact factor: 11.205

8.  Shape and fine structure of nucleoids observed on sections of ultrarapidly frozen and cryosubstituted bacteria.

Authors:  J A Hobot; W Villiger; J Escaig; M Maeder; A Ryter; E Kellenberger
Journal:  J Bacteriol       Date:  1985-06       Impact factor: 3.490

9.  Protein folding by the effects of macromolecular crowding.

Authors:  Nobuhiko Tokuriki; Masataka Kinjo; Shigeru Negi; Masaru Hoshino; Yuji Goto; Itaru Urabe; Tetsuya Yomo
Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

10.  Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity. Implications for protein-DNA interactions in vivo.

Authors:  S Cayley; B A Lewis; H J Guttman; M T Record
Journal:  J Mol Biol       Date:  1991-11-20       Impact factor: 5.469

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  44 in total

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2.  Ribosome Mediated Quinary Interactions Modulate In-Cell Protein Activities.

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3.  Molecular crowding limits translation and cell growth.

Authors:  Stefan Klumpp; Matthew Scott; Steen Pedersen; Terence Hwa
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-30       Impact factor: 11.205

4.  Melittin-Induced Permeabilization, Re-sealing, and Re-permeabilization of E. coli Membranes.

Authors:  Zhilin Yang; Heejun Choi; James C Weisshaar
Journal:  Biophys J       Date:  2018-01-23       Impact factor: 4.033

5.  Mobility of cytoplasmic, membrane, and DNA-binding proteins in Escherichia coli.

Authors:  Mohit Kumar; Mario S Mommer; Victor Sourjik
Journal:  Biophys J       Date:  2010-02-17       Impact factor: 4.033

6.  Spatial distribution and diffusive motion of RNA polymerase in live Escherichia coli.

Authors:  Benjamin P Bratton; Rachel A Mooney; James C Weisshaar
Journal:  J Bacteriol       Date:  2011-07-22       Impact factor: 3.490

Review 7.  From water and ions to crowded biomacromolecules: in vivo structuring of a prokaryotic cell.

Authors:  Jan Spitzer
Journal:  Microbiol Mol Biol Rev       Date:  2011-09       Impact factor: 11.056

8.  Near Saturation of Ribosomal L7/L12 Binding Sites with Ternary Complexes in Slowly Growing E. coli.

Authors:  Mainak Mustafi; James C Weisshaar
Journal:  J Mol Biol       Date:  2019-04-30       Impact factor: 5.469

9.  Diffusion of a soluble protein, photoactivatable GFP, through a sensory cilium.

Authors:  Peter D Calvert; William E Schiesser; Edward N Pugh
Journal:  J Gen Physiol       Date:  2010-03       Impact factor: 4.086

10.  Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm.

Authors:  Sean R McGuffee; Adrian H Elcock
Journal:  PLoS Comput Biol       Date:  2010-03-05       Impact factor: 4.475

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