Literature DB >> 22652932

Slowing down and stretching DNA with an electrically tunable nanopore in a p-n semiconductor membrane.

Dmitriy V Melnikov1, Jean-Pierre Leburton, Maria E Gracheva.   

Abstract

We have studied single-stranded DNA translocation through a semiconductor membrane consisting of doped p and n layers of Si forming a p-n-junction. Using Brownian dynamics simulations of the biomolecule in the self-consistent membrane-electrolyte potential obtained from the Poisson-Nernst-Planck model, we show that while polymer length is extended more than when its motion is constricted only by the physical confinement of the nanopore. The biomolecule elongation is particularly dramatic on the n-side of the membrane where the lateral membrane electric field restricts (focuses) the biomolecule motion more than on the p-side. The latter effect makes our membrane a solid-state analog of the α-hemolysin biochannel. The results indicate that the tunable local electric field inside the membrane can effectively control dynamics of a DNA in the channel to either momentarily trap, slow down or allow the biomolecule to translocate at will.

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Year:  2012        PMID: 22652932     DOI: 10.1088/0957-4484/23/25/255501

Source DB:  PubMed          Journal:  Nanotechnology        ISSN: 0957-4484            Impact factor:   3.874


  7 in total

1.  Electronic detection of dsDNA transition from helical to zipper conformation using graphene nanopores.

Authors:  Chaitanya Sathe; Anuj Girdhar; Jean-Pierre Leburton; Klaus Schulten
Journal:  Nanotechnology       Date:  2014-10-17       Impact factor: 3.874

2.  Stretching and controlled motion of single-stranded DNA in locally heated solid-state nanopores.

Authors:  Maxim Belkin; Christopher Maffeo; David B Wells; Aleksei Aksimentiev
Journal:  ACS Nano       Date:  2013-07-26       Impact factor: 15.881

Review 3.  Recent trends in nanopores for biotechnology.

Authors:  Daniel H Stoloff; Meni Wanunu
Journal:  Curr Opin Biotechnol       Date:  2012-12-19       Impact factor: 9.740

4.  Graphene quantum point contact transistor for DNA sensing.

Authors:  Anuj Girdhar; Chaitanya Sathe; Klaus Schulten; Jean-Pierre Leburton
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-30       Impact factor: 11.205

5.  Single nucleotide detection using bilayer MoS2 nanopores with high efficiency.

Authors:  Payel Sen; Manisha Gupta
Journal:  RSC Adv       Date:  2021-02-03       Impact factor: 3.361

6.  Voltage-driven translocation behaviors of IgG molecule through nanopore arrays.

Authors:  Lei Liu; Bing Wang; Jingjie Sha; Yue Yang; Yaozong Hou; Zhonghua Ni; Yunfei Chen
Journal:  Nanoscale Res Lett       Date:  2013-05-15       Impact factor: 4.703

7.  Intrinsic Stepwise Translocation of Stretched ssDNA in Graphene Nanopores.

Authors:  Hu Qiu; Aditya Sarathy; Jean-Pierre Leburton; Klaus Schulten
Journal:  Nano Lett       Date:  2015-11-25       Impact factor: 11.189

  7 in total

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