Literature DB >> 23129631

Energy-dispersive X-ray emission spectroscopy using an X-ray free-electron laser in a shot-by-shot mode.

Roberto Alonso-Mori1, Jan Kern, Richard J Gildea, Dimosthenis Sokaras, Tsu-Chien Weng, Benedikt Lassalle-Kaiser, Rosalie Tran, Johan Hattne, Hartawan Laksmono, Julia Hellmich, Carina Glöckner, Nathaniel Echols, Raymond G Sierra, Donald W Schafer, Jonas Sellberg, Christopher Kenney, Ryan Herbst, Jack Pines, Philip Hart, Sven Herrmann, Ralf W Grosse-Kunstleve, Matthew J Latimer, Alan R Fry, Marc M Messerschmidt, Alan Miahnahri, M Marvin Seibert, Petrus H Zwart, William E White, Paul D Adams, Michael J Bogan, Sébastien Boutet, Garth J Williams, Athina Zouni, Johannes Messinger, Pieter Glatzel, Nicholas K Sauter, Vittal K Yachandra, Junko Yano, Uwe Bergmann.   

Abstract

The ultrabright femtosecond X-ray pulses provided by X-ray free-electron lasers open capabilities for studying the structure and dynamics of a wide variety of systems beyond what is possible with synchrotron sources. Recently, this "probe-before-destroy" approach has been demonstrated for atomic structure determination by serial X-ray diffraction of microcrystals. There has been the question whether a similar approach can be extended to probe the local electronic structure by X-ray spectroscopy. To address this, we have carried out femtosecond X-ray emission spectroscopy (XES) at the Linac Coherent Light Source using redox-active Mn complexes. XES probes the charge and spin states as well as the ligand environment, critical for understanding the functional role of redox-active metal sites. Kβ(1,3) XES spectra of Mn(II) and Mn(2)(III,IV) complexes at room temperature were collected using a wavelength dispersive spectrometer and femtosecond X-ray pulses with an individual dose of up to >100 MGy. The spectra were found in agreement with undamaged spectra collected at low dose using synchrotron radiation. Our results demonstrate that the intact electronic structure of redox active transition metal compounds in different oxidation states can be characterized with this shot-by-shot method. This opens the door for studying the chemical dynamics of metal catalytic sites by following reactions under functional conditions. The technique can be combined with X-ray diffraction to simultaneously obtain the geometric structure of the overall protein and the local chemistry of active metal sites and is expected to prove valuable for understanding the mechanism of important metalloproteins, such as photosystem II.

Entities:  

Year:  2012        PMID: 23129631      PMCID: PMC3511075          DOI: 10.1073/pnas.1211384109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

2.  Double-core-hole spectroscopy for chemical analysis with an intense X-ray femtosecond laser.

Authors:  Nora Berrah; Li Fang; Brendan Murphy; Timur Osipov; Kiyoshi Ueda; Edwin Kukk; Raimund Feifel; Peter van der Meulen; Peter Salen; Henning T Schmidt; Richard D Thomas; Mats Larsson; Robert Richter; Kevin C Prince; John D Bozek; Christoph Bostedt; Shin-ichi Wada; Maria N Piancastelli; Motomichi Tashiro; Masahiro Ehara
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

3.  Molecular structural dynamics probed by ultrafast X-ray absorption spectroscopy.

Authors:  Christian Bressler; Majed Chergui
Journal:  Annu Rev Phys Chem       Date:  2010       Impact factor: 12.703

4.  X-ray emission spectroscopy.

Authors:  Uwe Bergmann; Pieter Glatzel
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

5.  Nanoflow electrospinning serial femtosecond crystallography.

Authors:  Raymond G Sierra; Hartawan Laksmono; Jan Kern; Rosalie Tran; Johan Hattne; Roberto Alonso-Mori; Benedikt Lassalle-Kaiser; Carina Glöckner; Julia Hellmich; Donald W Schafer; Nathaniel Echols; Richard J Gildea; Ralf W Grosse-Kunstleve; Jonas Sellberg; Trevor A McQueen; Alan R Fry; Marc M Messerschmidt; Alan Miahnahri; M Marvin Seibert; Christina Y Hampton; Dmitri Starodub; N Duane Loh; Dimosthenis Sokaras; Tsu-Chien Weng; Petrus H Zwart; Pieter Glatzel; Despina Milathianaki; William E White; Paul D Adams; Garth J Williams; Sébastien Boutet; Athina Zouni; Johannes Messinger; Nicholas K Sauter; Uwe Bergmann; Junko Yano; Vittal K Yachandra; Michael J Bogan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-10-18

6.  Manganese Kβ X-ray emission spectroscopy as a probe of metal-ligand interactions.

Authors:  Martha A Beckwith; Michael Roemelt; Marie-Noëlle Collomb; Carole DuBoc; Tsu-Chien Weng; Uwe Bergmann; Pieter Glatzel; Frank Neese; Serena DeBeer
Journal:  Inorg Chem       Date:  2011-08-01       Impact factor: 5.165

7.  Crystallographic and single-crystal spectral analysis of the peroxidase ferryl intermediate.

Authors:  Yergalem T Meharenna; Tzanko Doukov; Huiying Li; S Michael Soltis; Thomas L Poulos
Journal:  Biochemistry       Date:  2010-04-13       Impact factor: 3.162

8.  Absence of Mn-centered oxidation in the S(2) --> S(3) transition: implications for the mechanism of photosynthetic water oxidation.

Authors:  J Messinger; J H Robblee; U Bergmann; C Fernandez; P Glatzel; H Visser; R M Cinco; K L McFarlane; E Bellacchio; S A Pizarro; S P Cramer; K Sauer; M P Klein; V K Yachandra
Journal:  J Am Chem Soc       Date:  2001-08-15       Impact factor: 15.419

9.  Direct detection of oxygen ligation to the Mn(4)Ca cluster of photosystem II by X-ray emission spectroscopy.

Authors:  Yulia Pushkar; Xi Long; Pieter Glatzel; Gary W Brudvig; G Charles Dismukes; Terrence J Collins; Vittal K Yachandra; Junko Yano; Uwe Bergmann
Journal:  Angew Chem Int Ed Engl       Date:  2010       Impact factor: 15.336

Review 10.  X-ray absorption spectroscopy.

Authors:  Junko Yano; Vittal K Yachandra
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

View more
  40 in total

1.  A seven-crystal Johann-type hard x-ray spectrometer at the Stanford Synchrotron Radiation Lightsource.

Authors:  D Sokaras; T-C Weng; D Nordlund; R Alonso-Mori; P Velikov; D Wenger; A Garachtchenko; M George; V Borzenets; B Johnson; T Rabedeau; U Bergmann
Journal:  Rev Sci Instrum       Date:  2013-05       Impact factor: 1.523

2.  Goniometer-based femtosecond crystallography with X-ray free electron lasers.

Authors:  Aina E Cohen; S Michael Soltis; Ana González; Laura Aguila; Roberto Alonso-Mori; Christopher O Barnes; Elizabeth L Baxter; Winnie Brehmer; Aaron S Brewster; Axel T Brunger; Guillermo Calero; Joseph F Chang; Matthieu Chollet; Paul Ehrensberger; Thomas L Eriksson; Yiping Feng; Johan Hattne; Britt Hedman; Michael Hollenbeck; James M Holton; Stephen Keable; Brian K Kobilka; Elena G Kovaleva; Andrew C Kruse; Henrik T Lemke; Guowu Lin; Artem Y Lyubimov; Aashish Manglik; Irimpan I Mathews; Scott E McPhillips; Silke Nelson; John W Peters; Nicholas K Sauter; Clyde A Smith; Jinhu Song; Hilary P Stevenson; Yingssu Tsai; Monarin Uervirojnangkoorn; Vladimir Vinetsky; Soichi Wakatsuki; William I Weis; Oleg A Zadvornyy; Oliver B Zeldin; Diling Zhu; Keith O Hodgson
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-31       Impact factor: 11.205

3.  Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.

Authors:  Pierre Aller; Allen M Orville
Journal:  Methods Mol Biol       Date:  2021

4.  Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers.

Authors:  Johan Hattne; Nathaniel Echols; Rosalie Tran; Jan Kern; Richard J Gildea; Aaron S Brewster; Roberto Alonso-Mori; Carina Glöckner; Julia Hellmich; Hartawan Laksmono; Raymond G Sierra; Benedikt Lassalle-Kaiser; Alyssa Lampe; Guangye Han; Sheraz Gul; Dörte DiFiore; Despina Milathianaki; Alan R Fry; Alan Miahnahri; William E White; Donald W Schafer; M Marvin Seibert; Jason E Koglin; Dimosthenis Sokaras; Tsu-Chien Weng; Jonas Sellberg; Matthew J Latimer; Pieter Glatzel; Petrus H Zwart; Ralf W Grosse-Kunstleve; Michael J Bogan; Marc Messerschmidt; Garth J Williams; Sébastien Boutet; Johannes Messinger; Athina Zouni; Junko Yano; Uwe Bergmann; Vittal K Yachandra; Paul D Adams; Nicholas K Sauter
Journal:  Nat Methods       Date:  2014-03-16       Impact factor: 28.547

Review 5.  Methods development for diffraction and spectroscopy studies of metalloenzymes at X-ray free-electron lasers.

Authors:  Jan Kern; Johan Hattne; Rosalie Tran; Roberto Alonso-Mori; Hartawan Laksmono; Sheraz Gul; Raymond G Sierra; Jens Rehanek; Alexei Erko; Rolf Mitzner; Phillip Wernet; Uwe Bergmann; Nicholas K Sauter; Vittal Yachandra; Junko Yano
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

6.  The Mn₄Ca photosynthetic water-oxidation catalyst studied by simultaneous X-ray spectroscopy and crystallography using an X-ray free-electron laser.

Authors:  Rosalie Tran; Jan Kern; Johan Hattne; Sergey Koroidov; Julia Hellmich; Roberto Alonso-Mori; Nicholas K Sauter; Uwe Bergmann; Johannes Messinger; Athina Zouni; Junko Yano; Vittal K Yachandra
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

7.  X-ray absorption spectroscopy using a self-seeded soft X-ray free-electron laser.

Authors:  Thomas Kroll; Jan Kern; Markus Kubin; Daniel Ratner; Sheraz Gul; Franklin D Fuller; Heike Löchel; Jacek Krzywinski; Alberto Lutman; Yuantao Ding; Georgi L Dakovski; Stefan Moeller; Joshua J Turner; Roberto Alonso-Mori; Dennis L Nordlund; Jens Rehanek; Christian Weniger; Alexander Firsov; Maria Brzhezinskaya; Ruchira Chatterjee; Benedikt Lassalle-Kaiser; Raymond G Sierra; Hartawan Laksmono; Ethan Hill; Andrew Borovik; Alexei Erko; Alexander Föhlisch; Rolf Mitzner; Vittal K Yachandra; Junko Yano; Philippe Wernet; Uwe Bergmann
Journal:  Opt Express       Date:  2016-10-03       Impact factor: 3.894

8.  Simultaneous detection of electronic structure changes from two elements of a bifunctional catalyst using wavelength-dispersive X-ray emission spectroscopy and in situ electrochemistry.

Authors:  Sheraz Gul; Jia Wei Desmond Ng; Roberto Alonso-Mori; Jan Kern; Dimosthenis Sokaras; Eitan Anzenberg; Benedikt Lassalle-Kaiser; Yelena Gorlin; Tsu-Chien Weng; Petrus H Zwart; Jin Z Zhang; Uwe Bergmann; Vittal K Yachandra; Thomas F Jaramillo; Junko Yano
Journal:  Phys Chem Chem Phys       Date:  2015-03-06       Impact factor: 3.676

9.  X-ray Emission Spectroscopy as an in Situ Diagnostic Tool for X-ray Crystallography of Metalloproteins Using an X-ray Free-Electron Laser.

Authors:  Thomas Fransson; Ruchira Chatterjee; Franklin D Fuller; Sheraz Gul; Clemens Weninger; Dimosthenis Sokaras; Thomas Kroll; Roberto Alonso-Mori; Uwe Bergmann; Jan Kern; Vittal K Yachandra; Junko Yano
Journal:  Biochemistry       Date:  2018-06-28       Impact factor: 3.162

10.  L-Edge X-ray Absorption Spectroscopy of Dilute Systems Relevant to Metalloproteins Using an X-ray Free-Electron Laser.

Authors:  Rolf Mitzner; Jens Rehanek; Jan Kern; Sheraz Gul; Johan Hattne; Taketo Taguchi; Roberto Alonso-Mori; Rosalie Tran; Christian Weniger; Henning Schröder; Wilson Quevedo; Hartawan Laksmono; Raymond G Sierra; Guangye Han; Benedikt Lassalle-Kaiser; Sergey Koroidov; Katharina Kubicek; Simon Schreck; Kristjan Kunnus; Maria Brzhezinskaya; Alexander Firsov; Michael P Minitti; Joshua J Turner; Stefan Moeller; Nicholas K Sauter; Michael J Bogan; Dennis Nordlund; William F Schlotter; Johannes Messinger; Andrew Borovik; Simone Techert; Frank M F de Groot; Alexander Föhlisch; Alexei Erko; Uwe Bergmann; Vittal K Yachandra; Philippe Wernet; Junko Yano
Journal:  J Phys Chem Lett       Date:  2013-10-09       Impact factor: 6.475

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.