Literature DB >> 24050136

Combination of ligand- and structure-based methods in virtual screening.

Malgorzata N Drwal, Renate Griffith.   

Abstract

The combination of ligand- and structure-based molecular modelling methods has become a common approach in virtual screening. This review describes different strategies for integration of ligand- and structure-based methods which can be divided into sequential, parallel or hybrid approaches. Although no thorough performance comparisons between combined approaches are available, examples of successful applications in prospective and retrospective virtual screening are discussed. Most published studies use a sequential approach, utilising well-documented single methods successfully.

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Year:  2013        PMID: 24050136     DOI: 10.1016/j.ddtec.2013.02.002

Source DB:  PubMed          Journal:  Drug Discov Today Technol        ISSN: 1740-6749


  43 in total

Review 1.  Identifying ligands at orphan GPCRs: current status using structure-based approaches.

Authors:  Tony Ngo; Irina Kufareva; James Lj Coleman; Robert M Graham; Ruben Abagyan; Nicola J Smith
Journal:  Br J Pharmacol       Date:  2016-03-05       Impact factor: 8.739

2.  Identification of New Human Malaria Parasite Plasmodium falciparum Dihydroorotate Dehydrogenase Inhibitors by Pharmacophore and Structure-Based Virtual Screening.

Authors:  Elumalai Pavadai; Farah El Mazouni; Sergio Wittlin; Carmen de Kock; Margaret A Phillips; Kelly Chibale
Journal:  J Chem Inf Model       Date:  2016-03-08       Impact factor: 4.956

3.  Prospective evaluation of shape similarity based pose prediction method in D3R Grand Challenge 2015.

Authors:  Ashutosh Kumar; Kam Y J Zhang
Journal:  J Comput Aided Mol Des       Date:  2016-08-02       Impact factor: 3.686

4.  A pose prediction approach based on ligand 3D shape similarity.

Authors:  Ashutosh Kumar; Kam Y J Zhang
Journal:  J Comput Aided Mol Des       Date:  2016-07-05       Impact factor: 3.686

5.  Binding mode similarity measures for ranking of docking poses: a case study on the adenosine A2A receptor.

Authors:  Andrew Anighoro; Jürgen Bajorath
Journal:  J Comput Aided Mol Des       Date:  2016-06-22       Impact factor: 3.686

6.  Enabling the hypothesis-driven prioritization of ligand candidates in big databases: Screenlamp and its application to GPCR inhibitor discovery for invasive species control.

Authors:  Sebastian Raschka; Anne M Scott; Nan Liu; Santosh Gunturu; Mar Huertas; Weiming Li; Leslie A Kuhn
Journal:  J Comput Aided Mol Des       Date:  2018-01-30       Impact factor: 3.686

7.  A multi-fingerprint browser for the ZINC database.

Authors:  Mahendra Awale; Jean-Louis Reymond
Journal:  Nucleic Acids Res       Date:  2014-04-29       Impact factor: 16.971

8.  Virtual Screening of Human Class-A GPCRs Using Ligand Profiles Built on Multiple Ligand-Receptor Interactions.

Authors:  Wallace K B Chan; Yang Zhang
Journal:  J Mol Biol       Date:  2020-07-09       Impact factor: 5.469

9.  An efficient multistep ligand-based virtual screening approach for GPR40 agonists.

Authors:  Sihui Yao; Tao Lu; Zifan Zhou; Haichun Liu; Haoliang Yuan; Ting Ran; Shuai Lu; Yanmin Zhang; Zhipeng Ke; Jinxing Xu; Xiao Xiong; Yadong Chen
Journal:  Mol Divers       Date:  2013-12-05       Impact factor: 2.943

Review 10.  Modern approaches to accelerate discovery of new antischistosomal drugs.

Authors:  Bruno Junior Neves; Eugene Muratov; Renato Beilner Machado; Carolina Horta Andrade; Pedro Vitor Lemos Cravo
Journal:  Expert Opin Drug Discov       Date:  2016-05-03       Impact factor: 6.098

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