Literature DB >> 24046558

cis-(1,4,8,11-Tetra-aza-cyclo-tetra-decane-κN (4))bis(-thio-cyanato-κN)chromium(III) thio-cyanate.

Dohyun Moon1, Jong-Ha Choi, Keon Sang Ryoo, Yong Pyo Hong.   

Abstract

The crystal structure of [Cr(NCS)2(cyclam)]NCS (cyclam = 1,4,8,11-tetra-aza-cyclo-tetra-deca-ne, C10H24N4) has been determined by using synchrotron radiation at 98 K. The Cr(III) atom is in a slightly distorted octa-hedral environment with four N atoms of the macrocyclic ligand and two N-coordinated NCS(-) anions in cis positions. The average Cr-N(cyclam) and Cr-NCS bond lengths are 2.085 (5) and 1.996 (15) Å, respectively. In the crystal, the uncoordinating SCN(-) anion is hydrogen bonded through N-H⋯S and N-H⋯N inter-actions to neighbouring complex cations.

Entities:  

Year:  2013        PMID: 24046558      PMCID: PMC3772415          DOI: 10.1107/S1600536813015456

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Ferguson & Tobe (1970 ▶); For spectroscopic studies, see: Choi & Park (2003 ▶); Poon & Pun (1980 ▶). For related structures, see: Forsellini et al. (1986 ▶); Friesen et al. (1997 ▶); Meyer et al. (1998 ▶); Choi et al. (2004a ▶,b ▶, 2009 ▶); Subhan et al. (2011 ▶).

Experimental

Crystal data

[Cr(NCS)2(C10H24N4)]NCS M = 426.57 Monoclinic, a = 10.590 (2) Å b = 7.6970 (15) Å c = 23.750 (5) Å β = 94.70 (3)° V = 1929.4 (7) Å3 Z = 4 Synchrotron radiation λ = 0.740 Å μ = 1.03 mm−1 T = 98 K 0.01 × 0.01 × 0.01 mm

Data collection

ADSC Q210 CCD area-detector diffractometer Absorption correction: empirical (HKL-3000 SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.988, T max = 0.989 16587 measured reflections 4727 independent reflections 3998 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.085 S = 1.07 4727 reflections 234 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.38 e Å−3 Δρmin = −0.46 e Å−3 Data collection: ADSC Quantum-210 ADX (Arvai & Nielsen, 1983 ▶); cell refinement: HKL-3000 (Otwinowski & Minor, 1997 ▶); data reduction: HKL-3000; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008) ▶; program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008) ▶; molecular graphics: DIAMOND (Brandenburg, 2007 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813015456/lr2107sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813015456/lr2107Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cr(NCS)2(C10H24N4)]NCSF(000) = 89
Mr = 426.57Dx = 1.469 Mg m3
Monoclinic, P21/cSynchrotron radiation, λ = 0.740 Å
a = 10.590 (2) ÅCell parameters from 39021 reflections
b = 7.6970 (15) Åθ = 1.9–33.1°
c = 23.750 (5) ŵ = 1.03 mm1
β = 94.70 (3)°T = 98 K
V = 1929.4 (7) Å3Block, pink
Z = 40.01 × 0.01 × 0.01 mm
ADSC Q210 CCD area-detector diffractometer3998 reflections with I > 2σ(I)
Radiation source: PLSII 2D bending magnetRint = 0.038
ω scanθmax = 29.5°, θmin = 2.0°
Absorption correction: empirical (using intensity measurements) (HKL-3000SCALEPACK; Otwinowski & Minor, 1997)h = −14→14
Tmin = 0.988, Tmax = 0.989k = −10→10
16587 measured reflectionsl = −31→31
4727 independent reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.030w = 1/[σ2(Fo2) + (0.0543P)2 + 0.0369P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.085(Δ/σ)max = 0.001
S = 1.07Δρmax = 0.38 e Å3
4727 reflectionsΔρmin = −0.46 e Å3
234 parametersExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0149 (11)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Cr10.78572 (2)0.65230 (3)0.13425 (2)0.01445 (9)
S20.80594 (3)1.01716 (5)0.29372 (2)0.02043 (10)
S31.17137 (4)0.91514 (6)0.09132 (2)0.03337 (12)
N10.87142 (12)0.48585 (16)0.19523 (5)0.0176 (3)
H1N10.949 (2)0.521 (2)0.2008 (8)0.030 (5)*
N20.60770 (11)0.58345 (16)0.15912 (5)0.0158 (2)
H1N20.5895 (18)0.494 (3)0.1465 (8)0.026 (5)*
N30.80817 (12)0.44123 (17)0.08083 (5)0.0194 (3)
H1N30.7441 (18)0.378 (2)0.0769 (8)0.024 (5)*
N40.67930 (12)0.78077 (18)0.06965 (5)0.0193 (3)
H1N40.6773 (17)0.888 (2)0.0783 (8)0.024 (5)*
N50.95059 (12)0.74035 (17)0.11200 (5)0.0216 (3)
N60.78208 (12)0.85015 (16)0.18914 (5)0.0203 (3)
C10.82134 (14)0.4809 (2)0.25209 (6)0.0199 (3)
H1A0.83570.59540.27050.024*
H1B0.86940.39320.27560.024*
C20.68044 (14)0.4373 (2)0.25004 (6)0.0203 (3)
H2A0.66640.32450.23050.024*
H2B0.65690.42250.28920.024*
C30.59240 (14)0.5705 (2)0.22082 (6)0.0195 (3)
H3A0.50370.53870.22630.023*
H3B0.60940.68550.23850.023*
C40.88174 (15)0.30950 (19)0.17019 (7)0.0224 (3)
H4A0.80160.24490.17280.027*
H4B0.95090.24370.19110.027*
C50.90900 (15)0.3290 (2)0.10901 (7)0.0248 (3)
H5A0.99320.38300.10640.030*
H5B0.90890.21380.09050.030*
C60.51544 (14)0.7103 (2)0.13191 (6)0.0215 (3)
H6A0.52390.82390.15140.026*
H6B0.42780.66770.13410.026*
C70.54392 (14)0.7294 (2)0.07095 (6)0.0228 (3)
H7A0.52830.61800.05070.027*
H7B0.48840.81910.05210.027*
C80.83850 (16)0.4808 (2)0.02215 (6)0.0266 (3)
H8A0.84900.37030.00170.032*
H8B0.92010.54410.02350.032*
C90.73707 (17)0.5890 (2)−0.01027 (7)0.0295 (4)
H9A0.75680.5952−0.05030.035*
H9B0.65480.5286−0.00930.035*
C100.72283 (16)0.7724 (2)0.01150 (6)0.0257 (3)
H10A0.80540.83260.01140.031*
H10B0.66140.8356−0.01470.031*
C111.04332 (14)0.81402 (19)0.10314 (6)0.0200 (3)
C120.79292 (13)0.92117 (18)0.23267 (6)0.0172 (3)
S40.56857 (4)0.72414 (6)0.36233 (2)0.03051 (12)
N70.37447 (15)0.65647 (19)0.43301 (7)0.0338 (3)
C130.45576 (15)0.68218 (19)0.40360 (7)0.0235 (3)
U11U22U33U12U13U23
Cr10.01319 (12)0.01531 (13)0.01455 (13)−0.00352 (8)−0.00060 (8)0.00023 (8)
S20.01916 (18)0.02155 (19)0.02016 (19)−0.00004 (13)−0.00094 (14)−0.00355 (14)
S30.0250 (2)0.0448 (3)0.0303 (2)−0.01871 (19)0.00255 (17)0.00597 (19)
N10.0142 (6)0.0178 (6)0.0205 (6)−0.0020 (5)−0.0012 (5)0.0014 (5)
N20.0142 (6)0.0153 (6)0.0176 (6)−0.0019 (5)0.0005 (5)−0.0001 (5)
N30.0170 (6)0.0210 (6)0.0205 (6)−0.0036 (5)0.0031 (5)−0.0031 (5)
N40.0183 (6)0.0204 (6)0.0184 (6)−0.0053 (5)−0.0028 (5)0.0018 (5)
N50.0183 (6)0.0244 (7)0.0218 (6)−0.0068 (5)0.0002 (5)0.0017 (5)
N60.0216 (6)0.0171 (6)0.0217 (6)−0.0036 (5)−0.0012 (5)−0.0002 (5)
C10.0212 (7)0.0209 (7)0.0171 (7)−0.0012 (6)−0.0019 (6)0.0035 (6)
C20.0213 (7)0.0213 (7)0.0183 (7)−0.0019 (6)0.0022 (6)0.0036 (6)
C30.0176 (7)0.0223 (7)0.0190 (7)−0.0020 (6)0.0045 (6)−0.0001 (6)
C40.0208 (7)0.0177 (7)0.0282 (8)0.0016 (6)0.0000 (6)0.0006 (6)
C50.0219 (7)0.0231 (8)0.0298 (8)0.0023 (6)0.0042 (6)−0.0043 (6)
C60.0154 (7)0.0230 (7)0.0256 (8)0.0005 (6)−0.0006 (6)0.0038 (6)
C70.0172 (7)0.0275 (8)0.0228 (7)−0.0041 (6)−0.0045 (6)0.0043 (6)
C80.0293 (8)0.0320 (9)0.0195 (7)−0.0042 (7)0.0077 (6)−0.0062 (6)
C90.0340 (9)0.0378 (9)0.0167 (7)−0.0073 (8)0.0013 (7)−0.0040 (7)
C100.0284 (8)0.0323 (9)0.0160 (7)−0.0071 (7)−0.0006 (6)0.0049 (6)
C110.0211 (7)0.0234 (7)0.0150 (7)−0.0028 (6)−0.0019 (6)0.0004 (6)
C120.0146 (6)0.0146 (6)0.0218 (7)−0.0024 (5)−0.0017 (6)0.0028 (5)
S40.0347 (2)0.0333 (2)0.0235 (2)0.01233 (18)0.00211 (17)0.00132 (17)
N70.0297 (8)0.0263 (7)0.0453 (9)0.0070 (6)0.0013 (7)0.0027 (6)
C130.0260 (8)0.0160 (7)0.0267 (8)0.0081 (6)−0.0087 (7)−0.0027 (6)
Cr1—N51.9846 (13)C2—C31.515 (2)
Cr1—N62.0071 (13)C2—H2A0.9900
Cr1—N42.0781 (14)C2—H2B0.9900
Cr1—N12.0849 (13)C3—H3A0.9900
Cr1—N32.0868 (13)C3—H3B0.9900
Cr1—N22.0895 (13)C4—C51.512 (2)
S2—C121.6231 (15)C4—H4A0.9900
S3—C111.6081 (16)C4—H4B0.9900
N1—C41.4895 (19)C5—H5A0.9900
N1—C11.4913 (19)C5—H5B0.9900
N1—H1N10.86 (2)C6—C71.510 (2)
N2—C61.4904 (19)C6—H6A0.9900
N2—C31.4909 (18)C6—H6B0.9900
N2—H1N20.77 (2)C7—H7A0.9900
N3—C81.4871 (19)C7—H7B0.9900
N3—C51.489 (2)C8—C91.518 (2)
N3—H1N30.834 (19)C8—H8A0.9900
N4—C71.4901 (19)C8—H8B0.9900
N4—C101.4928 (19)C9—C101.515 (2)
N4—H1N40.851 (19)C9—H9A0.9900
N5—C111.168 (2)C9—H9B0.9900
N6—C121.1666 (19)C10—H10A0.9900
C1—C21.526 (2)C10—H10B0.9900
C1—H1A0.9900S4—C131.6384 (19)
C1—H1B0.9900N7—C131.169 (2)
N5—Cr1—N688.74 (6)H2A—C2—H2B107.5
N5—Cr1—N494.39 (5)N2—C3—C2112.52 (12)
N6—Cr1—N494.61 (6)N2—C3—H3A109.1
N5—Cr1—N193.01 (5)C2—C3—H3A109.1
N6—Cr1—N192.61 (5)N2—C3—H3B109.1
N4—Cr1—N1169.77 (5)C2—C3—H3B109.1
N5—Cr1—N387.56 (6)H3A—C3—H3B107.8
N6—Cr1—N3174.14 (5)N1—C4—C5108.61 (12)
N4—Cr1—N390.20 (5)N1—C4—H4A110.0
N1—Cr1—N383.06 (5)C5—C4—H4A110.0
N5—Cr1—N2174.70 (5)N1—C4—H4B110.0
N6—Cr1—N286.73 (5)C5—C4—H4B110.0
N4—Cr1—N283.23 (5)H4A—C4—H4B108.3
N1—Cr1—N289.96 (5)N3—C5—C4107.65 (12)
N3—Cr1—N297.17 (5)N3—C5—H5A110.2
C4—N1—C1112.42 (11)C4—C5—H5A110.2
C4—N1—Cr1108.95 (9)N3—C5—H5B110.2
C1—N1—Cr1118.54 (9)C4—C5—H5B110.2
C4—N1—H1N1104.3 (13)H5A—C5—H5B108.5
C1—N1—H1N1105.8 (13)N2—C6—C7107.70 (12)
Cr1—N1—H1N1105.6 (13)N2—C6—H6A110.2
C6—N2—C3110.46 (12)C7—C6—H6A110.2
C6—N2—Cr1106.62 (9)N2—C6—H6B110.2
C3—N2—Cr1117.91 (9)C7—C6—H6B110.2
C6—N2—H1N2106.5 (14)H6A—C6—H6B108.5
C3—N2—H1N2106.1 (14)N4—C7—C6108.29 (12)
Cr1—N2—H1N2108.7 (14)N4—C7—H7A110.0
C8—N3—C5109.76 (12)C6—C7—H7A110.0
C8—N3—Cr1117.03 (10)N4—C7—H7B110.0
C5—N3—Cr1106.96 (10)C6—C7—H7B110.0
C8—N3—H1N3104.5 (13)H7A—C7—H7B108.4
C5—N3—H1N3105.0 (12)N3—C8—C9112.93 (13)
Cr1—N3—H1N3113.0 (13)N3—C8—H8A109.0
C7—N4—C10112.23 (12)C9—C8—H8A109.0
C7—N4—Cr1108.83 (9)N3—C8—H8B109.0
C10—N4—Cr1118.20 (10)C9—C8—H8B109.0
C7—N4—H1N4102.1 (12)H8A—C8—H8B107.8
C10—N4—H1N4106.4 (12)C10—C9—C8115.10 (13)
Cr1—N4—H1N4107.8 (12)C10—C9—H9A108.5
C11—N5—Cr1170.02 (13)C8—C9—H9A108.5
C12—N6—Cr1157.72 (12)C10—C9—H9B108.5
N1—C1—C2113.34 (12)C8—C9—H9B108.5
N1—C1—H1A108.9H9A—C9—H9B107.5
C2—C1—H1A108.9N4—C10—C9113.77 (13)
N1—C1—H1B108.9N4—C10—H10A108.8
C2—C1—H1B108.9C9—C10—H10A108.8
H1A—C1—H1B107.7N4—C10—H10B108.8
C3—C2—C1115.42 (12)C9—C10—H10B108.8
C3—C2—H2A108.4H10A—C10—H10B107.7
C1—C2—H2A108.4N5—C11—S3179.66 (15)
C3—C2—H2B108.4N6—C12—S2178.82 (14)
C1—C2—H2B108.4N7—C13—S4178.35 (14)
C4—N1—C1—C2−72.13 (15)C3—N2—C6—C7174.88 (12)
Cr1—N1—C1—C256.50 (15)Cr1—N2—C6—C745.63 (13)
N1—C1—C2—C3−64.97 (17)C10—N4—C7—C6169.85 (13)
C6—N2—C3—C2177.56 (12)Cr1—N4—C7—C637.10 (15)
Cr1—N2—C3—C2−59.54 (15)N2—C6—C7—N4−55.65 (16)
C1—C2—C3—N266.51 (17)C5—N3—C8—C9177.66 (13)
C1—N1—C4—C5169.43 (12)Cr1—N3—C8—C9−60.26 (16)
Cr1—N1—C4—C535.94 (14)N3—C8—C9—C1066.73 (19)
C8—N3—C5—C4173.69 (12)C7—N4—C10—C9−71.42 (17)
Cr1—N3—C5—C445.79 (14)Cr1—N4—C10—C956.52 (16)
N1—C4—C5—N3−54.89 (16)C8—C9—C10—N4−64.47 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···S2i0.86 (2)2.59 (2)3.4138 (15)160.1 (17)
N2—H1N2···S4ii0.77 (2)2.66 (2)3.3521 (14)149.8 (18)
N3—H1N3···N7ii0.834 (19)2.119 (19)2.9238 (19)162.0 (17)
N4—H1N4···N7iii0.851 (19)2.150 (19)2.947 (2)155.9 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N1⋯S2i 0.86 (2)2.59 (2)3.4138 (15)160.1 (17)
N2—H1N2⋯S4ii 0.77 (2)2.66 (2)3.3521 (14)149.8 (18)
N3—H1N3⋯N7ii 0.834 (19)2.119 (19)2.9238 (19)162.0 (17)
N4—H1N4⋯N7iii 0.851 (19)2.150 (19)2.947 (2)155.9 (17)

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Cis-dinitrito(1,4,8,11-tetraazacyclotetradecane-kappa4N)chromium(III) nitrite.

Authors:  Jong-Ha Choi; In-Gyung Oh; Woo-Taik Lim; Ki-Min Park
Journal:  Acta Crystallogr C       Date:  2004-05-11       Impact factor: 1.172

  2 in total
  9 in total

1.  Crystal structure of cis-(1,4,8,11-tetra-aza-cyclo-tetra-decane-κ4 N)bis-(thio-cyanato-κN)chromium(III) bromide from synchrotron X-ray diffraction data.

Authors:  Dohyun Moon; Jong-Ha Choi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2021-02-02

2.  Crystal structure of bis-[trans-(ethane-1,2-di-amine-κ(2) N,N')bis-(thio-cyanato-κN)chromium(III)] tetra-chlorido-zincate from synchrotron data.

Authors:  Dohyun Moon; Jong-Ha Choi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-01

3.  Crystal structure of trans-bis-(ethane-1,2-diamine-κ(2) N,N')bis-(thio-cyanato-κN)chromium(III) perchlorate from synchrotron data.

Authors:  Dohyun Moon; Jong-Ha Choi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-05-20

4.  Crystal structure of bis-[trans-(1,4,8,11-tetra-aza-cyclo-tetra-decane-κ(4) N)bis-(thio-cyanato-κN)chromium(III)] tetra-chlorido-zincate from synchrotron data.

Authors:  Dohyun Moon; Keon Sang Ryoo; Jong-Ha Choi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-04-22

5.  Crystal structure of 1,4,8,11-tetra-azonia-cyclo-tetra-decane bis-(dichromate) monohydrate from synchrotron data.

Authors:  Dohyun Moon; Jong-Ha Choi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-04-28

6.  Crystal structure of cis-di-chlorido-(1,4,8,11-tetra-aza-cyclo-tetra-decane-κ4N)chromium(III) (oxalato-κ2O1,O2)(1,4,8,11-tetra-aza-cyclo-tetra-decane-κ4N)chromium(III) bis(perchlorate) from synchrotron data.

Authors:  Dohyun Moon; Jong-Ha Choi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-09-09

7.  Crystal structure of bis-[(oxalato-κ2O1,O2)(1,4,8,11-tetra-aza-cyclo-tetra-decane-κ4N)chromium(III)] dichromate octa-hydrate from synchrotron X-ray data.

Authors:  Dohyun Moon; Jong-Ha Choi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-02-17

8.  Crystal structure of bis-[cis-(1,4,8,11-tetra-aza-cyclo-tetra-deca-ne-κ4N)bis(thio-cyanato-κN)chrom-ium(III)] dichromate monohydrate from synchrotron X-ray diffraction data.

Authors:  Dohyun Moon; Masahiro Takase; Takashiro Akitsu; Jong-Ha Choi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-01-01

9.  Crystal structure of trans-di-chlorido-(1,4,8,11-tetra-aza-cyclo-tetra-decane-κ4 N)chromium(III) bis-(form-amide-κO)(1,4,8,11-tetra-aza-cyclo-tetra-decane-κ4 N)chromium(III) bis-[tetra-chlorido-zincate(II)].

Authors:  Dohyun Moon; Jong-Ha Choi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2020-04-09
  9 in total

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