Literature DB >> 24043373

SCoRS--A Method Based on Stability for Feature Selection and Mapping inNeuroimaging [corrected].

Jane M Rondina, Tim Hahn, Leticia de Oliveira, Andre F Marquand, Thomas Dresler, Thomas Leitner, Andreas J Fallgatter, John Shawe-Taylor, Janaina Mourao-Miranda.   

Abstract

Feature selection (FS) methods play two important roles in the context of neuroimaging based classification: potentially increase classification accuracy by eliminating irrelevant features from the model and facilitate interpretation by identifying sets of meaningful features that best discriminate the classes. Although the development of FS techniques specifically tuned for neuroimaging data is an active area of research, up to date most of the studies have focused on finding a subset of features that maximizes accuracy. However, maximizing accuracy does not guarantee reliable interpretation as similar accuracies can be obtained from distinct sets of features. In the current paper we propose a new approach for selecting features: SCoRS (survival count on random subsamples) based on a recently proposed Stability Selection theory. SCoRS relies on the idea of choosing relevant features that are stable under data perturbation. Data are perturbed by iteratively sub-sampling both features (subspaces) and examples. We demonstrate the potential of the proposed method in a clinical application to classify depressed patients versus healthy individuals based on functional magnetic resonance imaging data acquired during visualization of happy faces.

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Year:  2013        PMID: 24043373      PMCID: PMC4576737          DOI: 10.1109/TMI.2013.2281398

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  31 in total

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2.  Voxelwise meta-analysis of gray matter reduction in major depressive disorder.

Authors:  Ming-Ying Du; Qi-Zhu Wu; Qiang Yue; Jun Li; Yi Liao; Wei-Hong Kuang; Xiao-Qi Huang; Raymond C K Chan; Andrea Mechelli; Qi-Yong Gong
Journal:  Prog Neuropsychopharmacol Biol Psychiatry       Date:  2011-10-07       Impact factor: 5.067

3.  Classification of structural images via high-dimensional image warping, robust feature extraction, and SVM.

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4.  Diagnosis of brain abnormality using both structural and functional MR images.

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Review 5.  A review of feature selection techniques in bioinformatics.

Authors:  Yvan Saeys; Iñaki Inza; Pedro Larrañaga
Journal:  Bioinformatics       Date:  2007-08-24       Impact factor: 6.937

6.  Distributed representation of tone frequency in highly decodable spatio-temporal activity in the auditory cortex.

Authors:  Akihiro Funamizu; Ryohei Kanzaki; Hirokazu Takahashi
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7.  Integrating neurobiological markers of depression.

Authors:  Tim Hahn; Andre F Marquand; Ann-Christine Ehlis; Thomas Dresler; Sarah Kittel-Schneider; Tomasz A Jarczok; Klaus-Peter Lesch; Peter M Jakob; Janaina Mourao-Miranda; Michael J Brammer; Andreas J Fallgatter
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8.  ODVBA: optimally-discriminative voxel-based analysis.

Authors:  Tianhao Zhang; Christos Davatzikos
Journal:  IEEE Trans Med Imaging       Date:  2011-02-14       Impact factor: 10.048

Review 9.  A quantitative meta-analysis of fMRI studies in bipolar disorder.

Authors:  Chi-Hua Chen; John Suckling; Belinda R Lennox; Cinly Ooi; Ed T Bullmore
Journal:  Bipolar Disord       Date:  2011-02       Impact factor: 6.744

Review 10.  Emotional valence modulates brain functional abnormalities in depression: evidence from a meta-analysis of fMRI studies.

Authors:  Nynke A Groenewold; Esther M Opmeer; Peter de Jonge; André Aleman; Sergi G Costafreda
Journal:  Neurosci Biobehav Rev       Date:  2012-12-01       Impact factor: 8.989

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  22 in total

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Authors:  Melanie Ganz; Douglas N Greve; Bruce Fischl; Ender Konukoglu
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2.  Clinical prediction from structural brain MRI scans: a large-scale empirical study.

Authors:  Mert R Sabuncu; Ender Konukoglu
Journal:  Neuroinformatics       Date:  2015-01

3.  Chained regularization for identifying brain patterns specific to HIV infection.

Authors:  Ehsan Adeli; Dongjin Kwon; Qingyu Zhao; Adolf Pfefferbaum; Natalie M Zahr; Edith V Sullivan; Kilian M Pohl
Journal:  Neuroimage       Date:  2018-08-21       Impact factor: 6.556

4.  MIDAS: Regionally linear multivariate discriminative statistical mapping.

Authors:  Erdem Varol; Aristeidis Sotiras; Christos Davatzikos
Journal:  Neuroimage       Date:  2018-03-07       Impact factor: 6.556

5.  Diagnostic classification of specific phobia subtypes using structural MRI data: a machine-learning approach.

Authors:  Ulrike Lueken; Kevin Hilbert; Hans-Ulrich Wittchen; Andreas Reif; Tim Hahn
Journal:  J Neural Transm (Vienna)       Date:  2014-07-19       Impact factor: 3.575

6.  Comparison of Feature Selection Techniques in Machine Learning for Anatomical Brain MRI in Dementia.

Authors:  Jussi Tohka; Elaheh Moradi; Heikki Huttunen
Journal:  Neuroinformatics       Date:  2016-07

7.  A Bayesian probit model with spatially varying coefficients for brain decoding using fMRI data.

Authors:  Fengqing Zhang; Wenxin Jiang; Patrick Wong; Ji-Ping Wang
Journal:  Stat Med       Date:  2016-05-24       Impact factor: 2.373

Review 8.  Studying depression using imaging and machine learning methods.

Authors:  Meenal J Patel; Alexander Khalaf; Howard J Aizenstein
Journal:  Neuroimage Clin       Date:  2015-11-10       Impact factor: 4.881

Review 9.  Machine learning in major depression: From classification to treatment outcome prediction.

Authors:  Shuang Gao; Vince D Calhoun; Jing Sui
Journal:  CNS Neurosci Ther       Date:  2018-08-23       Impact factor: 5.243

10.  Towards a brain-based predictome of mental illness.

Authors:  Barnaly Rashid; Vince Calhoun
Journal:  Hum Brain Mapp       Date:  2020-05-06       Impact factor: 5.038

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