Literature DB >> 30138676

Chained regularization for identifying brain patterns specific to HIV infection.

Ehsan Adeli1, Dongjin Kwon2, Qingyu Zhao1, Adolf Pfefferbaum2, Natalie M Zahr2, Edith V Sullivan1, Kilian M Pohl3.   

Abstract

Human Immunodeficiency Virus (HIV) infection continues to have major adverse public health and clinical consequences despite the effectiveness of combination Antiretroviral Therapy (cART) in reducing HIV viral load and improving immune function. As successfully treated individuals with HIV infection age, their cognition declines faster than reported for normal aging. This phenomenon underlines the importance of improving long-term care, which requires a better understanding of the impact of HIV on the brain. In this paper, automated identification of patients and brain regions affected by HIV infection are modeled as a classification problem, whose solution is determined in two steps within our proposed Chained-Regularization framework. The first step focuses on selecting the HIV pattern (i.e., the most informative constellation of brain region measurements for distinguishing HIV infected subjects from healthy controls) by constraining the search for the optimal parameter setting of the classifier via group sparsity (ℓ2,1-norm). The second step improves classification accuracy by constraining the parameterization with respect to the selected measurements and the Euclidean regularization (ℓ2-norm). When applied to the cortical and subcortical structural Magnetic Resonance Images (MRI) measurements of 65 controls and 65 HIV infected individuals, this approach is more accurate in distinguishing the two cohorts than more common models. Finally, the brain regions of the identified HIV pattern concur with the HIV literature that uses traditional group analysis models.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Computational neuroscience; Group sparsity; Human immunodeficiency virus (HIV); MRI brain image analysis; Multiple kernel learning

Mesh:

Year:  2018        PMID: 30138676      PMCID: PMC6197908          DOI: 10.1016/j.neuroimage.2018.08.022

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  75 in total

1.  Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy.

Authors:  Hanchuan Peng; Fuhui Long; Chris Ding
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2005-08       Impact factor: 6.226

2.  Regional cortical thinning associated with detectable levels of HIV DNA.

Authors:  Kalpana J Kallianpur; Gregory R Kirk; Napapon Sailasuta; Victor Valcour; Bruce Shiramizu; Beau K Nakamoto; Cecilia Shikuma
Journal:  Cereb Cortex       Date:  2011-10-19       Impact factor: 5.357

3.  Skull stripping using graph cuts.

Authors:  Suresh A Sadananthan; Weili Zheng; Michael W L Chee; Vitali Zagorodnov
Journal:  Neuroimage       Date:  2009-09-02       Impact factor: 6.556

4.  Accelerated aging of selective brain structures in human immunodeficiency virus infection: a controlled, longitudinal magnetic resonance imaging study.

Authors:  Adolf Pfefferbaum; David A Rogosa; Margaret J Rosenbloom; Weiwei Chu; Stephanie A Sassoon; Carol A Kemper; Stanley Deresinski; Torsten Rohlfing; Natalie M Zahr; Edith V Sullivan
Journal:  Neurobiol Aging       Date:  2014-01-13       Impact factor: 4.673

5.  Regionally Specific Brain Volumetric and Cortical Thickness Changes in HIV-Infected Patients in the HAART Era.

Authors:  Ryan Sanford; Ana Lucia Fernandez Cruz; Susan C Scott; Nancy E Mayo; Lesley K Fellows; Beau M Ances; D Louis Collins
Journal:  J Acquir Immune Defic Syndr       Date:  2017-04-15       Impact factor: 3.731

6.  Thinning of the cerebral cortex visualized in HIV/AIDS reflects CD4+ T lymphocyte decline.

Authors:  Paul M Thompson; Rebecca A Dutton; Kiralee M Hayashi; Arthur W Toga; Oscar L Lopez; Howard J Aizenstein; James T Becker
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-14       Impact factor: 11.205

7.  Diffusion tensor MR imaging of white matter integrity in HIV-positive patients with planning deficit.

Authors:  Diogo Goulart Corrêa; Nicolle Zimmermann; Thomas M Doring; Nina Ventura Wilner; Sarah C B Leite; Rafael Ferracini Cabral; Rochele Paz Fonseca; Paulo R V Bahia; Emerson Leandro Gasparetto
Journal:  Neuroradiology       Date:  2015-01-22       Impact factor: 2.804

8.  HIV-associated alterations in normal-appearing white matter: a voxel-wise diffusion tensor imaging study.

Authors:  Glenn T Stebbins; Clifford A Smith; Russell E Bartt; Harold A Kessler; Oluwatoyin M Adeyemi; Eileen Martin; Jennifer L Cox; Roland Bammer; Michael E Moseley
Journal:  J Acquir Immune Defic Syndr       Date:  2007-12-15       Impact factor: 3.731

9.  Patterns of white matter injury in HIV infection after partial immune reconstitution: a DTI tract-based spatial statistics study.

Authors:  Tong Zhu; Jianhui Zhong; Rui Hu; Madalina Tivarus; Sven Ekholm; Jaroslaw Harezlak; Hernando Ombao; Bradford Navia; Ron Cohen; Giovanni Schifitto
Journal:  J Neurovirol       Date:  2012-11-21       Impact factor: 2.643

10.  HIV-associated neurocognitive disorders before and during the era of combination antiretroviral therapy: differences in rates, nature, and predictors.

Authors:  Robert K Heaton; Donald R Franklin; Ronald J Ellis; J Allen McCutchan; Scott L Letendre; Shannon Leblanc; Stephanie H Corkran; Nichole A Duarte; David B Clifford; Steven P Woods; Ann C Collier; Christina M Marra; Susan Morgello; Monica Rivera Mindt; Michael J Taylor; Thomas D Marcotte; J Hampton Atkinson; Tanya Wolfson; Benjamin B Gelman; Justin C McArthur; David M Simpson; Ian Abramson; Anthony Gamst; Christine Fennema-Notestine; Terry L Jernigan; Joseph Wong; Igor Grant
Journal:  J Neurovirol       Date:  2010-12-21       Impact factor: 2.643

View more
  10 in total

1.  Novel Machine Learning Identifies Brain Patterns Distinguishing Diagnostic Membership of Human Immunodeficiency Virus, Alcoholism, and Their Comorbidity of Individuals.

Authors:  Ehsan Adeli; Natalie M Zahr; Adolf Pfefferbaum; Edith V Sullivan; Kilian M Pohl
Journal:  Biol Psychiatry Cogn Neurosci Neuroimaging       Date:  2019-03-01

2.  Multi-label, multi-domain learning identifies compounding effects of HIV and cognitive impairment.

Authors:  Jiequan Zhang; Qingyu Zhao; Ehsan Adeli; Adolf Pfefferbaum; Edith V Sullivan; Robert Paul; Victor Valcour; Kilian M Pohl
Journal:  Med Image Anal       Date:  2021-10-13       Impact factor: 8.545

3.  Data Augmentation Based on Substituting Regional MRIs Volume Scores.

Authors:  Tuo Leng; Qingyu Zhao; Chao Yang; Zhufu Lu; Ehsan Adeli; Kilian M Pohl
Journal:  Large Scale Annot Biomed Data Export Label Synth Hardw Aware Learn Med Imaging Comput Assist Interv (2019)       Date:  2019-10-24

4.  Confounder-Aware Visualization of ConvNets.

Authors:  Qingyu Zhao; Ehsan Adeli; Adolf Pfefferbaum; Edith V Sullivan; Kilian M Pohl
Journal:  Mach Learn Med Imaging       Date:  2019-10-10

5.  Adolescent alcohol use disrupts functional neurodevelopment in sensation seeking girls.

Authors:  Qingyu Zhao; Edith V Sullivan; Eva M Műller-Oehring; Nicolas Honnorat; Ehsan Adeli; Simon Podhajsky; Fiona C Baker; Ian M Colrain; Devin Prouty; Susan F Tapert; Sandra A Brown; Mary J Meloy; Ty Brumback; Bonnie J Nagel; Angelica M Morales; Duncan B Clark; Beatriz Luna; Michael D De Bellis; James T Voyvodic; Kate B Nooner; Adolf Pfefferbaum; Kilian M Pohl
Journal:  Addict Biol       Date:  2020-05-19       Impact factor: 4.280

6.  Machine learning prediction of neurocognitive impairment among people with HIV using clinical and multimodal magnetic resonance imaging data.

Authors:  Yunan Xu; Yizi Lin; Ryan P Bell; Sheri L Towe; John M Pearson; Tauseef Nadeem; Cliburn Chan; Christina S Meade
Journal:  J Neurovirol       Date:  2021-01-19       Impact factor: 2.643

7.  Longitudinal Pooling & Consistency Regularization to Model Disease Progression From MRIs.

Authors:  Jiahong Ouyang; Qingyu Zhao; Edith V Sullivan; Adolf Pfefferbaum; Susan F Tapert; Ehsan Adeli; Kilian M Pohl
Journal:  IEEE J Biomed Health Inform       Date:  2021-06-11       Impact factor: 7.021

8.  Multimodal magnetic resonance neuroimaging measures characteristic of early cART-treated pediatric HIV: A feature selection approach.

Authors:  Isaac L Khobo; Marcin Jankiewicz; Martha J Holmes; Francesca Little; Mark F Cotton; Barbara Laughton; Andre J W van der Kouwe; Allison Moreau; Emmanuel Nwosu; Ernesta M Meintjes; Frances C Robertson
Journal:  Hum Brain Mapp       Date:  2022-05-16       Impact factor: 5.399

9.  Identification of key somatic oncogenic mutation based on a confounder-free causal inference model.

Authors:  Yijun Liu; Ji Sun; Huiyan Sun; Yi Chang
Journal:  PLoS Comput Biol       Date:  2022-09-22       Impact factor: 4.779

10.  Training confounder-free deep learning models for medical applications.

Authors:  Qingyu Zhao; Ehsan Adeli; Kilian M Pohl
Journal:  Nat Commun       Date:  2020-11-26       Impact factor: 14.919

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.