Literature DB >> 22243582

Quality control of mRNA decoding on the bacterial ribosome.

Marina V Rodnina1.   

Abstract

The ribosome is a major player in providing accurate gene expression in the cell. The fidelity of substrate selection is tightly controlled throughout the translation process, including the initiation, elongation, and termination phases. Although each phase of translation involves different players, that is, translation factors and tRNAs, the general principles of selection appear surprisingly similar for very different substrates. At essentially every step of translation, differences in complex stabilities as well as induced fit are sources of selectivity. A view starts to emerge of how the ribosome uses local and global conformational switches to govern induced-fit mechanisms that ensure fidelity. This review describes the mechanisms of tRNA and mRNA selection at all phases of protein synthesis in bacteria.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22243582     DOI: 10.1016/B978-0-12-386497-0.00003-7

Source DB:  PubMed          Journal:  Adv Protein Chem Struct Biol        ISSN: 1876-1623            Impact factor:   3.507


  26 in total

1.  The ribosome can discriminate the chirality of amino acids within its peptidyl-transferase center.

Authors:  Michael T Englander; Joshua L Avins; Rachel C Fleisher; Bo Liu; Philip R Effraim; Jiangning Wang; Klaus Schulten; Thomas S Leyh; Ruben L Gonzalez; Virginia W Cornish
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

Review 2.  Translational Control under Stress: Reshaping the Translatome.

Authors:  Vivek M Advani; Pavel Ivanov
Journal:  Bioessays       Date:  2019-05       Impact factor: 4.345

3.  A Mutation in the 16S rRNA Decoding Region Attenuates the Virulence of Mycobacterium tuberculosis.

Authors:  Shinya Watanabe; Kazunori Matsumura; Hiroki Iwai; Keiji Funatogawa; Yuji Haishima; Chie Fukui; Kayo Okumura; Masako Kato-Miyazawa; Masahito Hashimoto; Kanae Teramoto; Fumiko Kirikae; Tohru Miyoshi-Akiyama; Teruo Kirikae
Journal:  Infect Immun       Date:  2016-07-21       Impact factor: 3.441

Review 4.  Genome stability versus transcript diversity.

Authors:  Brian Magnuson; Karan Bedi; Mats Ljungman
Journal:  DNA Repair (Amst)       Date:  2016-05-16

5.  Structural basis of co-translational quality control by ArfA and RF2 bound to ribosome.

Authors:  Fuxing Zeng; Yanbo Chen; Jonathan Remis; Mrinal Shekhar; James C Phillips; Emad Tajkhorshid; Hong Jin
Journal:  Nature       Date:  2017-01-11       Impact factor: 49.962

Review 6.  Function and origin of mistranslation in distinct cellular contexts.

Authors:  Michael H Schwartz; Tao Pan
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-01-11       Impact factor: 8.250

7.  Near-cognate suppression of amber, opal and quadruplet codons competes with aminoacyl-tRNAPyl for genetic code expansion.

Authors:  Patrick O'Donoghue; Laure Prat; Ilka U Heinemann; Jiqiang Ling; Keturah Odoi; Wenshe R Liu; Dieter Söll
Journal:  FEBS Lett       Date:  2012-10-01       Impact factor: 4.124

8.  Flipping of the ribosomal A-site adenines provides a basis for tRNA selection.

Authors:  Xiancheng Zeng; Jeetender Chugh; Anette Casiano-Negroni; Hashim M Al-Hashimi; Charles L Brooks
Journal:  J Mol Biol       Date:  2014-05-09       Impact factor: 5.469

9.  tRNA residues evolved to promote translational accuracy.

Authors:  Irina Shepotinovskaya; Olke C Uhlenbeck
Journal:  RNA       Date:  2013-02-25       Impact factor: 4.942

Review 10.  tRNA-mimicry in IRES-mediated translation and recoding.

Authors:  Samuel E Butcher; Eric Jan
Journal:  RNA Biol       Date:  2016-08-11       Impact factor: 4.652

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