| Literature DB >> 23866021 |
Salma A Abdelmagid1, Shannon E Clarke1, Jeremy Wong1, Kaitlin Roke1, Daiva Nielsen2, Alaa Badawi3, Ahmed El-Sohemy2, David M Mutch1, David Wl Ma1.
Abstract
BACKGROUND: The conjugated linoleic acid isomer cis9trans11 CLA can be endogenously synthesized from trans vaccenic acid (C18:1 t11) via desaturation at the delta 9 position catalyzed by the stearoyl-CoA desaturase 1 (SCD1), also known as delta-9 desaturase (D9D). Diet, hormonal regulation of gene expression and single nucleotide polymorphisms (SNPs) have been implicated in altering circulating levels of fatty acids. Hormonal contraceptives (HC) have also been shown to influence levels of some fatty acids. SNPs in SCD1 have been associated with altered levels of palmitoleic and oleic acids; however, associations between SCD1 SNPs and D9D desaturation index have not been previously examined in relation to CLA. Herein, we investigated the effects of sex and HC use on circulating concentrations of c9t11 CLA and D9D desaturation index. Furthermore, we determined the effects of ten SCD1 SNPs on D9D desaturation indices estimated by product to precursor ratio of c9t11 CLA to C18:1 t11.Entities:
Keywords: Hormonal contraceptives; SCD1; Single nucleotide polymorphisms; c9t11 CLA
Year: 2013 PMID: 23866021 PMCID: PMC3722052 DOI: 10.1186/1743-7075-10-50
Source DB: PubMed Journal: Nutr Metab (Lond) ISSN: 1743-7075 Impact factor: 4.169
General characteristics of study population at fasting state compared by sex and separated by ethnicity
| | ||||||
|---|---|---|---|---|---|---|
| Population (#) | 113 | 298 | | 98 | 277 | |
| Hormonal contraceptive users (%) | N/A | 46.0 | | N/A | 15.5 | |
| Age (yrs) | 23.1 ± 0.2 | 23.1 ± 0.1 | 0.87 | 22.4 ± 0.2 | 22.1 ± 0.1 | 0.26 |
| BMI (kg/m2) | 23.3 ± 0.3 | 23.1 ± 0.2 | 0.54 | 23.2 ± 0.3 | 21.2 ± 0.1 | <0.01* |
| HOMA-IR | 1.16 ± 0.08 | 1.39 ± 0.05 | 0.02* | 1.42 ± 0.08 | 1.45 ± 0.10 | 0.84 |
| Glucose (mmol/L) | 4.88 ± 0.07 | 4.70 ± 0.02 | <0.01* | 4.95 ± 0.04 | 4.73 ± 0.02 | <0.01* |
| Insulin (pmol/L) | 37.1 ± 2.1 | 47.4 ± 1.7 | <0.01* | 45.7 ± 2.3 | 48.1 ± 2.9 | 0.62 |
| Total cholesterol (mmol/L) | 3.97 ± 0.07 | 4.35 ± 0.05 | <0.01* | 4.13 ± 0.08 | 4.29 ± 0.04 | <0.05* |
| HDL-cholesterol (mmol/L) | 1.38 ± 0.03 | 1.69 ± 0.02 | <0.01* | 1.39 ± 0.03 | 1.68 ± 0.02 | <0.01* |
| LDL-cholesterol (mmol/L) | 2.16 ± 0.06 | 2.23 ± 0.04 | 0.32 | 2.29 ± 0.07 | 2.21 ± 0.04 | 0.24 |
| Triglycerides (mmol/L) | 0.96 ± 0.05 | 0.97 ± 0.02 | 0.86 | 0.98 ± 0.05 | 0.91 ± 0.02 | 0.19 |
| Free fatty acids (mmol/L) | 454 ± 24.6 | 489 ± 14.2 | 0.21 | 453 ± 21.4 | 521 ± 15.4 | 0.02* |
| % of Total Energy from Dietary Fat | 27.4 ± 0.6 | 27.9 ± 0.4 | 0.56 | 26.3 ± 0.5 | 26.2 ± 0.3 | 0.98 |
Statistical differences were determined using a Student’s T-test. The * denotes p-values which are significant (< 0.05).
Estimates of fatty acid concentrations (μg/ml) in Caucasian and Asian males and females
| 18:0 | 131.9 ± 3.3 | 137.7 ± 1.8 | 0.08 | 133.1 ± 3.0 | 140.1 ± 1.8 | 0.03* |
| 18:1 t9 | 4.1 ± 0.2 | 4.7 ± 0.2 | 0.04* | 3.7 ± 0.2 | 4.4 ± 0.2 | <0.01* |
| 18:1 t11 | 4.6 ± 0.2 | 4.8 ± 0.2 | 0.50 | 4.0 ± 0.2 | 4.3 ± 0.2 | 0.04* |
| 18:2c9t11 | 4.5 ± 0.2 | 5.3 ± 0.1 | <0.01* | 3.7 ± 0.1 | 4.1 ± 0.1 | <0.01* |
| 18:2c11t13 | 0.5 ± 0.0 | 0.6 ± 0.0 | 0.15 | 0.5 ± 0.1 | 0.5 ± 0.0 | <0.01* |
| 18:2t10c12 | 1.1 ± 0.1 | 1.2 ± 0.0 | 0.16 | 1.2 ± 0.1 | 1.2 ± 0.0 | 0.73 |
| 18:2c9t11/18:1 t11 | 1.0 ± 0.0 | 1.2 ± 0.0 | <0.01* | 1.1 ± 0.0 | 1.1 ± 0.0 | 0.01* |
Select fatty acids used as substrate and product of D9D, desaturase index and major CLA isomers are reported. The * denotes p-values which are significant (< 0.05). P-values were determined using linear regression models which were adjusted for BMI, age, % of Total Energy from Dietary Fat and physical activity. Caucasian Males: n = 113; Caucasian females: n = 298; Asian Males: n = 98; Asian Females: n = 277.
Estimates of fatty acid concentrations (μg/ml) in Caucasian and Asian females using hormonal contraceptives
| 18:0 | 134.7 ± 2.5 | 141.3 ± 2.5 | 0.03 | 139.4 ± 2.0 | 143.6 ± 4.2 | 0.20 |
| 18:1 t9 | 4.2 ± 0.2 | 5.2 ± 0.3 | <0.01* | 4.2 ± 0.2 | 5.5 ± 0.5 | 0.02* |
| 18:1 t11 | 4.4 ± 0.2 | 5.3 ± 0.3 | <0.01* | 4.2 ± 0.2 | 5.0 ± 0.4 | 0.13 |
| 18:2c9t11 | 4.5 ± 0.1 | 6.1 ± 0.2 | <0.01* | 3.9 ± 0.1 | 5.2 ± 0.3 | <0.01* |
| 18:2c11t13 | 0.6 ± 0.0 | 0.6 ± 0.0 | 0.07 | 0.5 ± 0.0 | 0.7 ± 0.1 | <0.01* |
| 18:2t10c12 | 1.1 ± 0.1 | 1.2 ± 0.0 | 0.12 | 1.2 ± 0.0 | 1.3 ± 0.1 | 0.26 |
| 18:2c9t11/18:1 t11 | 1.2 ± 0.1 | 1.3 ± 0.0 | 0.06 | 1.1 ± 0.0 | 1.2 ± 0.1 | 0.05 |
Select fatty acids used as substrate and product of D9D, desaturase index and major CLA isomers are reported. *denotes p-values which are significant (< 0.05). P-values were determined using linear regression models which were adjusted for BMI, age, % of Total Energy from Dietary Fat and physical activity. Abbreviations: HC, females using hormonal contraceptives; non, females that are not using hormonal contraceptives.
HWE values of and their genotype frequencies
| rs10883463 | 0.79 | T | 0.09 | 0.99 | T | 0.10 | 0.99 | T | 0.01 | 0.98 | T | 1.9•10-3 |
| rs417669878 | 0.79 | G | 0.42 | 0.99 | G | 0.42 | 0.98 | G | 0.26 | 0.98 | G | 0.28 |
| rs2060792 | 0.83 | A | 0.26 | 0.99 | A | 0.29 | 0.99 | A | 0.39 | 0.98 | A | 0.31 |
| rs3071 | 0.79 | T | 0.29 | 0.99 | T | 0.31 | 0.98 | T | 0.27 | 0.98 | T | 0.28 |
| rs3793766 | 0.79 | C | 0.12 | 0.99 | C | 0.08 | 0.99 | C | 0.17 | 0.98 | C | 0.18 |
| rs3793767 | 0.82 | T | 0.40 | 0.99 | T | 0.37 | 0.98 | T | 0.45 | 0.98 | T | 0.35 |
| rs490726 | 0.67 | T | 0.22 | 0.99 | T | 0.19 | 0.99 | T | 0.23 | 0.98 | T | 0.28 |
| rs522951 | 0.83 | G | 0.48 | 0.99 | G | 0.49 | 0.99 | G | 0.42 | 0.98 | G | 0.32 |
| rs569184 | 0.79 | C | 0.12 | 0.99 | C | 0.08 | 0.99 | C | 0.20 | 0.98 | C | 0.28 |
| rs575338 | 0.79 | G | 0.15 | 0.99 | G | 0.13 | NP | G | 0.98 | G | 5.6•10-3 | |
SNPs with HWE p-values less than 0.05 are not in Hardy-Weinberg Equilibrium. Caucasian Males: n = 113; Caucasian females: n = 298; Asian Males: n = 98; Asian Females: n = 277. Abbreviations: HWE, Hardy-Weinberg Equilibrium p-values; MAF, minor allele frequency; NP, not polymorphic (MAF = 0).
Estimates of D9D activity according to genotype for each SNP in Caucasians
| | ||||||||
|---|---|---|---|---|---|---|---|---|
| rs10883463 | 1.077 ± 0.036a | 0.769 ± 0.048b | - | <0.01* | 1.206 ± 0.036 | 1.244 ± 0.061 | 1.505 ± 0.170 | 0.75 |
| rs17669878 | 1.079 ± 0.070 | 0.977 ± 0.040 | 1.064 ± 0.076 | 0.23 | 1.248 ± 0.041 | 1.195 ± 0.050 | 1.207 ± 0.074 | 0.72 |
| rs2060792 | 1.015 ± 0.037 | 0.998 ± 0.061 | 1.215 ± 0.179 | 0.62 | 1.251 ± 0.053 | 1.175 ± 0.036 | 1.229 ± 0.088 | 0.58 |
| rs3071 | 1.037 ± 0.052 | 1.024 ± 0.046 | 0.913 ± 0.051 | 0.78 | 1.202 ± 0.031 | 1.224 ± 0.059 | 1.238 ± 0.105 | 0.87 |
| rs3793766 | 1.003 ± 0.036 | 1.083 ± 0.078 | 1.200 | 0.59 | 1.217 ± 0.035 | 1.209 ± 0.057 | 1.084 ± 0.391 | 0.94 |
| rs3793767 | 0.939 ± 0.042 | 1.043 ± 0.051 | 1.111 ± 0.097 | 0.25 | 1.178 ± 0.043 | 1.252 ± 0.052 | 1.200 ± 0.054 | 0.81 |
| rs490726 | 1.073 ± 0.042 | 0.960 ± 0.053 | 0.856 ± 0.344 | 0.23 | 1.215 ± 0.041 | 1.217 ± 0.046 | 1.229 ± 0.107 | 0.99 |
| rs522951 | 1.044 ± 0.046 | 1.011 ± 0.050 | 1.019 ± 0.081 | 0.78 | 1.125 ± 0.055 | 1.252 ± 0.049 | 1.237 ± 0.048 | 0.42 |
| rs569184 | 1.010 ± 0.036 | 1.060 ± 0.079 | 1.200 | 0.72 | 1.223 ± 0.035 | 1.198 ± 0.054 | 0.637 ± 0.055 | 0.38 |
| rs575338 | 1.024 ± 0.042 | 1.024 ± 0.045 | 1.003 ± 0.155 | 0.99 | 1.193 ± 0.029 | 1.291 ± 0.098 | 1.188 ± 0.084 | 0.44 |
Results of analysis of 10 SNPs from SCD1 for associations with D9D activity index [182c9t11:181 t11]. Different letters (a or b) denote values that are significantly different between groups. P-values were determined using linear regression models which were adjusted for BMI, age, % of Total Energy from Dietary Fat and physical activity. Caucasian Males: n = 113; Caucasian females: n = 298; Asian Males: n = 98; Asian Females: n = 277. Abbreviations: D9D, delat-9-desaturase; M, major; m, minor; ‘-’ indicates that no subjects with this genotype were present in this population.
Estimates of D9D activity according to genotype for each SNP in Asians
| | ||||||||
|---|---|---|---|---|---|---|---|---|
| rs10883463 | 1.039 ± 0.041 | 0.813 ± 0.064 | - | 0.46 | 1.085 ± 0.027 | 0.783 | - | 0.23 |
| rs17669878 | 1.094 ± 0.059 | 0.966 ± 0.052 | 0.910 ± 0.118 | 0.18 | 1.035 ± 0.035 | 1.139 ± 0.043 | 1.061 ± 0.096 | 0.28 |
| rs2060792 | 0.949 ± 0.049 | 1.052 ± 0.064 | 1.185 ± 0.107 | 0.27 | 1.090 ± 0.040 | 1.058 ± 0.038 | 1.185 ± 0.084 | 0.37 |
| rs3071 | 1.069 ± 0.061 | 0.959 ± 0.048 | 1.103 ± 0.121 | 0.34 | 1.052 ± 0.038 | 1.143 ± 0.041 | 0.939 ± 0.063 | 0.11 |
| rs3793766 | 1.035 ± 0.047 | 1.053 ± 0.081 | 0.752 ± 0.036 | 0.88 | 1.072 ± 0.030 | 1.117 ± 0.056 | 0.906 ± 0.081 | 0.59 |
| rs3793767 | 0.993 ± 0.057 | 1.028 ± 0.058 | 1.120 ± 0.104 | 0.66 | 1.109 ± 0.044 | 1.051 ± 0.037 | 1.120 ± 0.067 | 0.54 |
| rs490726 | 1.035 ± 0.048 | 1.070 ± 0.077 | 0.795 ± 0.051 | 0.68 | 1.056 ± 0.034 | 1.128 ± 0.044 | 1.038 ± 0.101 | 0.19 |
| rs522951 | 0.975 ± 0.053 | 1.030 ± 0.062 | 1.164 ± 0.102 | 0.40 | 1.095 ± 0.041 | 1.058 ± 0.038 | 1.156 ± 0.080 | 0.42 |
| rs569184 | 1.041 ± 0.049 | 1.052 ± 0.076 | 0.807 ± 0.064 | 0.86 | 1.045 ± 0.034 | 1.129 ± 0.046 | 1.070 ± 0.093 | 0.25 |
| rs575338 | N/A | 1.082 ± 0.027 | 0.815 ± 0.143 | - | 0.47 | |||
Results of analysis of 10 SNPs from SCD1 for associations with D9D activity index [182c9t11:181 t11]. P-values were determined using linear regression models which were adjusted for BMI, age, % of Total Energy from Dietary Fat and physical activity. Caucasian Males: n = 113; Caucasian females: n = 298; Asian Males: n = 98; Asian Females: n = 277. Abbreviations: D9D, delat-9-desaturase; M, major; m, minor; na, not applicable; ‘-’ indicates that no subjects with this genotype were present in this population.