Literature DB >> 23838175

Engineering polyketide synthases and nonribosomal peptide synthetases.

Gavin J Williams1.   

Abstract

Naturally occurring polyketides and nonribosomal peptides with broad and potent biological activities continue to inspire the discovery of new and improved analogs. The biosynthetic apparatus responsible for the construction of these natural products has been the target of intensive protein engineering efforts. Traditionally, engineering has focused on substituting individual enzymatic domains or entire modules with those of different building block specificity, or by deleting various enzymatic functions, in an attempt to generate analogs. This review highlights strategies based on site-directed mutagenesis of substrate binding pockets, semi-rational mutagenesis, and whole-gene random mutagenesis to engineer the substrate specificity, activity, and protein interactions of polyketide and nonribosomal peptide biosynthetic machinery.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23838175      PMCID: PMC4271453          DOI: 10.1016/j.sbi.2013.06.012

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  68 in total

1.  Insights into bacterial 6-methylsalicylic acid synthase and its engineering to orsellinic acid synthase for spirotetronate generation.

Authors:  Wei Ding; Chun Lei; Qingli He; Qinglin Zhang; Yurong Bi; Wen Liu
Journal:  Chem Biol       Date:  2010-05-28

2.  High-throughput mutagenesis to evaluate models of stereochemical control in ketoreductase domains from the erythromycin polyketide synthase.

Authors:  Helen M O'Hare; Abel Baerga-Ortiz; Bojana Popovic; Jonathan B Spencer; Peter F Leadlay
Journal:  Chem Biol       Date:  2006-03

Review 3.  Type II polyketide synthases: gaining a deeper insight into enzymatic teamwork.

Authors:  Christian Hertweck; Andriy Luzhetskyy; Yuri Rebets; Andreas Bechthold
Journal:  Nat Prod Rep       Date:  2006-11-22       Impact factor: 13.423

4.  Synthesis of unnatural alkaloid scaffolds by exploiting plant polyketide synthase.

Authors:  Hiroyuki Morita; Makoto Yamashita; She-Po Shi; Toshiyuki Wakimoto; Shin Kondo; Ryohei Kato; Shigetoshi Sugio; Toshiyuki Kohno; Ikuro Abe
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-08       Impact factor: 11.205

5.  The Catalytic Diversity of Multimodular Polyketide Synthases: Natural Product Biosynthesis Beyond Textbook Assembly Rules.

Authors:  Tobias A M Gulder; Michael F Freeman; Jörn Piel
Journal:  Top Curr Chem       Date:  2011-03-01

Review 6.  Flexibility and reactivity in promiscuous enzymes.

Authors:  Pietro Gatti-Lafranconi; Florian Hollfelder
Journal:  Chembiochem       Date:  2013-01-29       Impact factor: 3.164

7.  Acyl-CoA subunit selectivity in the pikromycin polyketide synthase PikAIV: steady-state kinetics and active-site occupancy analysis by FTICR-MS.

Authors:  Shilah A Bonnett; Christopher M Rath; Abdur-Rafay Shareef; Joanna R Joels; Joseph A Chemler; Kristina Håkansson; Kevin Reynolds; David H Sherman
Journal:  Chem Biol       Date:  2011-09-23

Review 8.  Combinatorial biosynthesis of polyketides--a perspective.

Authors:  Fong T Wong; Chaitan Khosla
Journal:  Curr Opin Chem Biol       Date:  2012-02-16       Impact factor: 8.822

9.  AraC regulatory protein mutants with altered effector specificity.

Authors:  Shuang-Yan Tang; Hossein Fazelinia; Patrick C Cirino
Journal:  J Am Chem Soc       Date:  2008-03-21       Impact factor: 15.419

10.  Fungal type I polyketide synthases.

Authors:  Russell J Cox; Thomas J Simpson
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

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  26 in total

Review 1.  Enzymatic strategies and biocatalysts for amide bond formation: tricks of the trade outside of the ribosome.

Authors:  Anwesha Goswami; Steven G Van Lanen
Journal:  Mol Biosyst       Date:  2014-11-24

Review 2.  Leveraging structure for enzyme function prediction: methods, opportunities, and challenges.

Authors:  Matthew P Jacobson; Chakrapani Kalyanaraman; Suwen Zhao; Boxue Tian
Journal:  Trends Biochem Sci       Date:  2014-07-02       Impact factor: 13.807

Review 3.  Breaking a pathogen's iron will: Inhibiting siderophore production as an antimicrobial strategy.

Authors:  Audrey L Lamb
Journal:  Biochim Biophys Acta       Date:  2015-05-10

4.  Biosynthetic Cyclization Catalysts for the Assembly of Peptide and Polyketide Natural Products.

Authors:  Maria L Adrover-Castellano; Jennifer J Schmidt; David H Sherman
Journal:  ChemCatChem       Date:  2021-01-28       Impact factor: 5.686

5.  Unique features of the ketosynthase domain in a nonribosomal peptide synthetase-polyketide synthase hybrid enzyme, tenuazonic acid synthetase 1.

Authors:  Choong-Soo Yun; Kazuki Nishimoto; Takayuki Motoyama; Takeshi Shimizu; Tomoya Hino; Naoshi Dohmae; Shingo Nagano; Hiroyuki Osada
Journal:  J Biol Chem       Date:  2020-06-21       Impact factor: 5.157

6.  Single polysaccharide assembly protein that integrates polymerization, termination, and chain-length quality control.

Authors:  Danielle M Williams; Olga G Ovchinnikova; Akihiko Koizumi; Iain L Mainprize; Matthew S Kimber; Todd L Lowary; Chris Whitfield
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-30       Impact factor: 11.205

Review 7.  Synthetic biology to access and expand nature's chemical diversity.

Authors:  Michael J Smanski; Hui Zhou; Jan Claesen; Ben Shen; Michael A Fischbach; Christopher A Voigt
Journal:  Nat Rev Microbiol       Date:  2016-03       Impact factor: 60.633

8.  Inversion of Extender Unit Selectivity in the Erythromycin Polyketide Synthase by Acyltransferase Domain Engineering.

Authors:  Irina Koryakina; Christian Kasey; John B McArthur; Andrew N Lowell; Joseph A Chemler; Shasha Li; Douglas A Hansen; David H Sherman; Gavin J Williams
Journal:  ACS Chem Biol       Date:  2016-11-29       Impact factor: 5.100

9.  α-Methylation follows condensation in the gephyronic acid modular polyketide synthase.

Authors:  Drew T Wagner; D Cole Stevens; M Rachel Mehaffey; Hannah R Manion; Richard E Taylor; Jennifer S Brodbelt; Adrian T Keatinge-Clay
Journal:  Chem Commun (Camb)       Date:  2016-07-07       Impact factor: 6.222

10.  Evolution of Efficient Modular Polyketide Synthases by Homologous Recombination.

Authors:  Joseph A Chemler; Ashootosh Tripathi; Douglas A Hansen; Mark O'Neil-Johnson; Russell B Williams; Courtney Starks; Sung Ryeol Park; David H Sherman
Journal:  J Am Chem Soc       Date:  2015-08-13       Impact factor: 15.419

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