Literature DB >> 23831288

Single-particle cryo-EM of calcium release channels: structural validation.

Steven J Ludtke1, Irina I Serysheva.   

Abstract

Few tools are available to determine the structure of large integral membrane proteins such as intracellular Ca(2+) release channels, RyRs and IP3Rs. Single particle cryo-EM can readily determine the structure of such channels to intermediate resolution, and can be used to quantitatively assess conformational variability. However, due to the, often low, image contrast of these cryospecimens, methods for validation are critical to insure the accuracy of such structures, and to put limits on their interpretability. The low-resolution structure of RyR has been well established for some time, but high-resolution has been slow to emerge. The structure of IP3R channel by cryo-EM had a number of false-starts, but improved validation methods have recently lead to a demonstrably accurate reconstruction.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23831288      PMCID: PMC3805725          DOI: 10.1016/j.sbi.2013.06.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  52 in total

1.  Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy.

Authors:  Peter B Rosenthal; Richard Henderson
Journal:  J Mol Biol       Date:  2003-10-31       Impact factor: 5.469

2.  Internal structure and visualization of transmembrane domains of the RyR1 calcium release channel by cryo-EM.

Authors:  Montserrat Samsó; Terence Wagenknecht; P D Allen
Journal:  Nat Struct Mol Biol       Date:  2005-05-22       Impact factor: 15.369

3.  Three-dimensional architecture of the calcium channel/foot structure of sarcoplasmic reticulum.

Authors:  T Wagenknecht; R Grassucci; J Frank; A Saito; M Inui; S Fleischer
Journal:  Nature       Date:  1989-03-09       Impact factor: 49.962

4.  Purified ryanodine receptor from skeletal muscle sarcoplasmic reticulum is the Ca2+-permeable pore of the calcium release channel.

Authors:  T Imagawa; J S Smith; R Coronado; K P Campbell
Journal:  J Biol Chem       Date:  1987-12-05       Impact factor: 5.157

5.  Putative receptor for inositol 1,4,5-trisphosphate similar to ryanodine receptor.

Authors:  G A Mignery; T C Südhof; K Takei; P De Camilli
Journal:  Nature       Date:  1989-11-09       Impact factor: 49.962

6.  Structure of the inositol 1,4,5-trisphosphate receptor binding core in complex with its ligand.

Authors:  Ivan Bosanac; Jean-René Alattia; Tapas K Mal; Jenny Chan; Susanna Talarico; Frances K Tong; Kit I Tong; Fumio Yoshikawa; Teiichi Furuichi; Miwako Iwai; Takayuki Michikawa; Katsuhiko Mikoshiba; Mitsuhiko Ikura
Journal:  Nature       Date:  2002-11-17       Impact factor: 49.962

7.  Purification of the ryanodine receptor and identity with feet structures of junctional terminal cisternae of sarcoplasmic reticulum from fast skeletal muscle.

Authors:  M Inui; A Saito; S Fleischer
Journal:  J Biol Chem       Date:  1987-02-05       Impact factor: 5.157

8.  Crystal structures of the N-terminal domains of cardiac and skeletal muscle ryanodine receptors: insights into disease mutations.

Authors:  Paolo Antonio Lobo; Filip Van Petegem
Journal:  Structure       Date:  2009-11-11       Impact factor: 5.006

9.  Outcome of the first electron microscopy validation task force meeting.

Authors:  Richard Henderson; Andrej Sali; Matthew L Baker; Bridget Carragher; Batsal Devkota; Kenneth H Downing; Edward H Egelman; Zukang Feng; Joachim Frank; Nikolaus Grigorieff; Wen Jiang; Steven J Ludtke; Ohad Medalia; Pawel A Penczek; Peter B Rosenthal; Michael G Rossmann; Michael F Schmid; Gunnar F Schröder; Alasdair C Steven; David L Stokes; John D Westbrook; Willy Wriggers; Huanwang Yang; Jasmine Young; Helen M Berman; Wah Chiu; Gerard J Kleywegt; Catherine L Lawson
Journal:  Structure       Date:  2012-02-08       Impact factor: 5.006

10.  Coordinated movement of cytoplasmic and transmembrane domains of RyR1 upon gating.

Authors:  Montserrat Samsó; Wei Feng; Isaac N Pessah; P D Allen
Journal:  PLoS Biol       Date:  2009-04-14       Impact factor: 8.029

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  9 in total

Review 1.  Structure of IP3R channel: high-resolution insights from cryo-EM.

Authors:  Mariah R Baker; Guizhen Fan; Irina I Serysheva
Journal:  Curr Opin Struct Biol       Date:  2017-06-12       Impact factor: 6.809

2.  Muscling in on the ryanodine receptor.

Authors:  Ivana Y Kuo; Barbara E Ehrlich
Journal:  Nat Struct Mol Biol       Date:  2015-02       Impact factor: 15.369

Review 3.  G Protein-Coupled Receptor Heteromers.

Authors:  Ivone Gomes; Mohammed Akli Ayoub; Wakako Fujita; Werner C Jaeger; Kevin D G Pfleger; Lakshmi A Devi
Journal:  Annu Rev Pharmacol Toxicol       Date:  2015-10-22       Impact factor: 13.820

Review 4.  Inositol 1,4,5-trisphosphate receptors in the endoplasmic reticulum: A single-channel point of view.

Authors:  Don-On Daniel Mak; J Kevin Foskett
Journal:  Cell Calcium       Date:  2014-12-18       Impact factor: 6.817

5.  Selecting ions by size in a calcium channel: the ryanodine receptor case study.

Authors:  Dirk Gillespie; Le Xu; Gerhard Meissner
Journal:  Biophys J       Date:  2014-11-18       Impact factor: 4.033

Review 6.  Structural Insight Into Ryanodine Receptor Channelopathies.

Authors:  Hadiatullah Hadiatullah; Zhao He; Zhiguang Yuchi
Journal:  Front Pharmacol       Date:  2022-05-23       Impact factor: 5.988

Review 7.  A guide to the 3D structure of the ryanodine receptor type 1 by cryoEM.

Authors:  Montserrat Samsó
Journal:  Protein Sci       Date:  2016-10-13       Impact factor: 6.725

8.  Architecture of the Yeast Mitochondrial Iron-Sulfur Cluster Assembly Machinery: THE SUB-COMPLEX FORMED BY THE IRON DONOR, Yfh1 PROTEIN, AND THE SCAFFOLD, Isu1 PROTEIN.

Authors:  Wasantha Ranatunga; Oleksandr Gakh; Belinda K Galeano; Douglas Y Smith; Christopher A G Söderberg; Salam Al-Karadaghi; James R Thompson; Grazia Isaya
Journal:  J Biol Chem       Date:  2016-03-03       Impact factor: 5.157

Review 9.  A primer to single-particle cryo-electron microscopy.

Authors:  Yifan Cheng; Nikolaus Grigorieff; Pawel A Penczek; Thomas Walz
Journal:  Cell       Date:  2015-04-23       Impact factor: 41.582

  9 in total

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