Literature DB >> 27671094

A guide to the 3D structure of the ryanodine receptor type 1 by cryoEM.

Montserrat Samsó1.   

Abstract

Signal transduction by the ryanodine receptor (RyR) is essential in many excitable cells including all striated contractile cells and some types of neurons. While its transmembrane domain is a classic tetrameric, six-transmembrane cation channel, the cytoplasmic domain is uniquely large and complex, hosting a multiplicity of specialized domains. The overall outline and substructure readily recognizable by electron microscopy make RyR a geometrically well-behaved specimen. Hence, for the last two decades, the 3D structural study of the RyR has tracked closely the technological advances in electron microscopy, cryo-electron microscopy (cryoEM), and computerized 3D reconstruction. This review summarizes the progress in the structural determination of RyR by cryoEM and, bearing in mind the leap in resolution provided by the recent implementation of direct electron detection, analyzes the first near-atomic structures of RyR. These reveal a complex orchestration of domains controlling the channel's function, and help to understand how this could break down as a consequence of disease-causing mutations.
© 2016 The Protein Society.

Entities:  

Keywords:  3D reconstruction; allosterism; calcium; cryo electron microscopy; excitation-contraction coupling; ryanodine receptor

Mesh:

Substances:

Year:  2016        PMID: 27671094      PMCID: PMC5192967          DOI: 10.1002/pro.3052

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  130 in total

1.  Cryo-EM of the native structure of the calcium release channel/ryanodine receptor from sarcoplasmic reticulum.

Authors:  M Radermacher; T Wagenknecht; R Grassucci; J Frank; M Inui; C Chadwick; S Fleischer
Journal:  Biophys J       Date:  1992-04       Impact factor: 4.033

2.  Structure of the voltage-gated calcium channel Cav1.1 complex.

Authors:  Jianping Wu; Zhen Yan; Zhangqiang Li; Chuangye Yan; Shan Lu; Mengqiu Dong; Nieng Yan
Journal:  Science       Date:  2015-12-18       Impact factor: 47.728

3.  Structure of the Janus protein human CLIC2.

Authors:  Brett A Cromer; Michael A Gorman; Guido Hansen; Julian J Adams; Marjorie Coggan; Dene R Littler; Louise J Brown; Michele Mazzanti; Samuel N Breit; Paul M G Curmi; Angela F Dulhunty; Philip G Board; Michael W Parker
Journal:  J Mol Biol       Date:  2007-09-20       Impact factor: 5.469

Review 4.  Single-particle reconstruction of biological macromolecules in electron microscopy--30 years.

Authors:  Joachim Frank
Journal:  Q Rev Biophys       Date:  2009-08       Impact factor: 5.318

5.  Zero-loss image formation and modified contrast transfer theory in EFTEM.

Authors:  I Angert; E Majorovits; R R Schröder
Journal:  Ultramicroscopy       Date:  2000-04       Impact factor: 2.689

6.  Molecular cloning of cDNA encoding human and rabbit forms of the Ca2+ release channel (ryanodine receptor) of skeletal muscle sarcoplasmic reticulum.

Authors:  F Zorzato; J Fujii; K Otsu; M Phillips; N M Green; F A Lai; G Meissner; D H MacLennan
Journal:  J Biol Chem       Date:  1990-02-05       Impact factor: 5.157

7.  Calmodulin activation and inhibition of skeletal muscle Ca2+ release channel (ryanodine receptor).

Authors:  A Tripathy; L Xu; G Mann; G Meissner
Journal:  Biophys J       Date:  1995-07       Impact factor: 4.033

8.  Myoplasmic resting Ca2+ regulation by ryanodine receptors is under the control of a novel Ca2+-binding region of the receptor.

Authors:  Yanyi Chen; Shenghui Xue; Juan Zou; Jose R Lopez; Jenny J Yang; Claudio F Perez
Journal:  Biochem J       Date:  2014-06-01       Impact factor: 3.857

9.  Structure of the rabbit ryanodine receptor RyR1 at near-atomic resolution.

Authors:  Zhen Yan; Xiaochen Bai; Chuangye Yan; Jianping Wu; Zhangqiang Li; Tian Xie; Wei Peng; Changcheng Yin; Xueming Li; Sjors H W Scheres; Yigong Shi; Nieng Yan
Journal:  Nature       Date:  2014-12-15       Impact factor: 49.962

10.  Structural insights into Ca(2+)-activated long-range allosteric channel gating of RyR1.

Authors:  Risheng Wei; Xue Wang; Yan Zhang; Saptarshi Mukherjee; Lei Zhang; Qiang Chen; Xinrui Huang; Shan Jing; Congcong Liu; Shuang Li; Guangyu Wang; Yaofang Xu; Sujie Zhu; Alan J Williams; Fei Sun; Chang-Cheng Yin
Journal:  Cell Res       Date:  2016-08-30       Impact factor: 25.617

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  15 in total

Review 1.  FK506-binding proteins 12 and 12.6 (FKBPs) as regulators of cardiac Ryanodine Receptors: Insights from new functional and structural knowledge.

Authors:  Luis A Gonano; Peter P Jones
Journal:  Channels (Austin)       Date:  2017-06-21       Impact factor: 2.581

2.  Mapping co-regulatory interactions among ligand-binding sites in ryanodine receptor 1.

Authors:  Venkat R Chirasani; Konstantin I Popov; Gerhard Meissner; Nikolay V Dokholyan
Journal:  Proteins       Date:  2021-09-06

3.  Molecular mechanism of the severe MH/CCD mutation Y522S in skeletal ryanodine receptor (RyR1) by cryo-EM.

Authors:  Kavita A Iyer; Yifan Hu; Thomas Klose; Takashi Murayama; Montserrat Samsó
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-22       Impact factor: 12.779

4.  Purification of Recombinant Wild Type and Mutant Ryanodine Receptors Expressed in HEK293 Cells.

Authors:  Yifan Hu; Kavita A Iyer; Ashok R Nayak; Nagomi Kurebayashi; Takashi Murayama; Montserrat Samsó
Journal:  Bio Protoc       Date:  2021-08-05

Review 5.  Electron microscopy of cardiac 3D nanodynamics: form, function, future.

Authors:  Peter Kohl; Joachim Greiner; Eva A Rog-Zielinska
Journal:  Nat Rev Cardiol       Date:  2022-04-08       Impact factor: 49.421

6.  The FKBP12 subunit modifies the long-range allosterism of the ryanodine receptor.

Authors:  Tyler W E Steele; Montserrat Samsó
Journal:  J Struct Biol       Date:  2019-01-11       Impact factor: 2.867

Review 7.  Malignant Hyperthermia in the Post-Genomics Era: New Perspectives on an Old Concept.

Authors:  Sheila Riazi; Natalia Kraeva; Philip M Hopkins
Journal:  Anesthesiology       Date:  2018-01       Impact factor: 7.892

Review 8.  The structural basis of ryanodine receptor ion channel function.

Authors:  Gerhard Meissner
Journal:  J Gen Physiol       Date:  2017-11-09       Impact factor: 4.086

Review 9.  Voltage sensing mechanism in skeletal muscle excitation-contraction coupling: coming of age or midlife crisis?

Authors:  Erick O Hernández-Ochoa; Martin F Schneider
Journal:  Skelet Muscle       Date:  2018-07-19       Impact factor: 4.912

10.  Correlation of phenotype with genotype and protein structure in RYR1-related disorders.

Authors:  Joshua J Todd; Vatsala Sagar; Tokunbor A Lawal; Carolyn Allen; Muslima S Razaqyar; Monique S Shelton; Irene C Chrismer; Xuemin Zhang; Mary M Cosgrove; Anna Kuo; Ruhi Vasavada; Minal S Jain; Melissa Waite; Dinusha Rajapakse; Jessica W Witherspoon; Graeme Wistow; Katherine G Meilleur
Journal:  J Neurol       Date:  2018-08-28       Impact factor: 4.849

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