Literature DB >> 23807872

WebProtégé: A Collaborative Ontology Editor and Knowledge Acquisition Tool for the Web.

Tania Tudorache1, Csongor Nyulas, Natalya F Noy, Mark A Musen.   

Abstract

In this paper, we present WebProtégé-a lightweight ontology editor and knowledge acquisition tool for the Web. With the wide adoption of Web 2.0 platforms and the gradual adoption of ontologies and Semantic Web technologies in the real world, we need ontology-development tools that are better suited for the novel ways of interacting, constructing and consuming knowledge. Users today take Web-based content creation and online collaboration for granted. WebProtégé integrates these features as part of the ontology development process itself. We tried to lower the entry barrier to ontology development by providing a tool that is accessible from any Web browser, has extensive support for collaboration, and a highly customizable and pluggable user interface that can be adapted to any level of user expertise. The declarative user interface enabled us to create custom knowledge-acquisition forms tailored for domain experts. We built WebProtégé using the existing Protégé infrastructure, which supports collaboration on the back end side, and the Google Web Toolkit for the front end. The generic and extensible infrastructure allowed us to easily deploy WebProtégé in production settings for several projects. We present the main features of WebProtégé and its architecture and describe briefly some of its uses for real-world projects. WebProtégé is free and open source. An online demo is available at http://webprotege.stanford.edu.

Entities:  

Keywords:  Protégé; Semantic Web; Web-based ontology editing; collaboration; knowledge acquisition

Year:  2013        PMID: 23807872      PMCID: PMC3691821          DOI: 10.3233/SW-2012-0057

Source DB:  PubMed          Journal:  Semant Web        ISSN: 1570-0844            Impact factor:   2.214


  4 in total

Review 1.  Bio-ontologies: current trends and future directions.

Authors:  Olivier Bodenreider; Robert Stevens
Journal:  Brief Bioinform       Date:  2006-08-09       Impact factor: 11.622

Review 2.  Biomedical ontologies: a functional perspective.

Authors:  Daniel L Rubin; Nigam H Shah; Natalya F Noy
Journal:  Brief Bioinform       Date:  2007-12-12       Impact factor: 11.622

3.  Supporting the Collaborative Authoring of ICD-11 with WebProtégé.

Authors:  Tania Tudorache; Sean Falconer; Csongor Nyulas; Margaret-Anne Storey; Tevik Bedirhan Ustün; Mark A Musen
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

4.  BioPortal: ontologies and integrated data resources at the click of a mouse.

Authors:  Natalya F Noy; Nigam H Shah; Patricia L Whetzel; Benjamin Dai; Michael Dorf; Nicholas Griffith; Clement Jonquet; Daniel L Rubin; Margaret-Anne Storey; Christopher G Chute; Mark A Musen
Journal:  Nucleic Acids Res       Date:  2009-05-29       Impact factor: 16.971

  4 in total
  19 in total

1.  Reasoning based quality assurance of medical ontologies: a case study.

Authors:  Matthew Horridge; Bijan Parsia; Natalya F Noy; Mark A Musenm
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

2.  Modelling expertise at different levels of granularity using semantic similarity measures in the context of collaborative knowledge-curation platforms.

Authors:  Hasti Ziaimatin; Tudor Groza; Tania Tudorache; Jane Hunter
Journal:  J Intell Inf Syst       Date:  2015-08-19       Impact factor: 1.888

3.  Discovering beaten paths in collaborative ontology-engineering projects using Markov chains.

Authors:  Simon Walk; Philipp Singer; Markus Strohmaier; Tania Tudorache; Mark A Musen; Natalya F Noy
Journal:  J Biomed Inform       Date:  2014-06-17       Impact factor: 6.317

4.  How Ontologies are Made: Studying the Hidden Social Dynamics Behind Collaborative Ontology Engineering Projects.

Authors:  Markus Strohmaier; Simon Walk; Jan Pöschko; Daniel Lamprecht; Tania Tudorache; Csongor Nyulas; Mark A Musen; Natalya F Noy
Journal:  Web Semant       Date:  2013-05       Impact factor: 1.897

5.  PragmatiX: An Interactive Tool for Visualizing the Creation Process Behind Collaboratively Engineered Ontologies.

Authors:  Simon Walk; Jan Pöschko; Markus Strohmaier; Keith Andrews; Tania Tudorache; Natalya F Noy; Csongor Nyulas; Mark A Musen
Journal:  Int J Semant Web Inf Syst       Date:  2013       Impact factor: 0.843

6.  A unified software framework for deriving, visualizing, and exploring abstraction networks for ontologies.

Authors:  Christopher Ochs; James Geller; Yehoshua Perl; Mark A Musen
Journal:  J Biomed Inform       Date:  2016-06-23       Impact factor: 6.317

7.  Analysis and Prediction of User Editing Patterns in Ontology Development Projects.

Authors:  Hao Wang; Tania Tudorache; Dejing Dou; Natalya F Noy; Mark A Musen
Journal:  J Data Semant       Date:  2015-06

8.  Modeling seizures in the Human Phenotype Ontology according to contemporary ILAE concepts makes big phenotypic data tractable.

Authors:  David Lewis-Smith; Peter D Galer; Ganna Balagura; Hugh Kearney; Shiva Ganesan; Mahgenn Cosico; Margaret O'Brien; Priya Vaidiswaran; Roland Krause; Colin A Ellis; Rhys H Thomas; Peter N Robinson; Ingo Helbig
Journal:  Epilepsia       Date:  2021-05-05       Impact factor: 6.740

9.  The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation.

Authors:  Gaston K Mazandu; Jade Hotchkiss; Victoria Nembaware; Ambroise Wonkam; Nicola Mulder
Journal:  Database (Oxford)       Date:  2022-04-01       Impact factor: 4.462

10.  CSEO - the Cigarette Smoke Exposure Ontology.

Authors:  Erfan Younesi; Sam Ansari; Michaela Guendel; Shiva Ahmadi; Chris Coggins; Julia Hoeng; Martin Hofmann-Apitius; Manuel C Peitsch
Journal:  J Biomed Semantics       Date:  2014-07-10
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