Literature DB >> 25954373

Reasoning based quality assurance of medical ontologies: a case study.

Matthew Horridge1, Bijan Parsia2, Natalya F Noy1, Mark A Musenm1.   

Abstract

The World Health Organisation is using OWL as a key technology to develop ICD-11 - the next version of the well-known International Classification of Diseases. Besides providing better opportunities for data integration and linkages to other well-known ontologies such as SNOMED-CT, one of the main promises of using OWL is that it will enable various forms of automated error checking. In this paper we investigate how automated OWL reasoning, along with a Justification Finding Service can be used as a Quality Assurance technique for the development of large and complex ontologies such as ICD-11. Using the International Classification of Traditional Medicine (ICTM) - Chapter 24 of ICD-11 - as a case study, and an expert panel of knowledge engineers, we reveal the kinds of problems that can occur, how they can be detected, and how they can be fixed. Specifically, we found that a logically inconsistent version of the ICTM ontology could be repaired using justifications (minimal entailing subsets of an ontology). Although over 600 justifications for the inconsistency were initially computed, we found that there were three main manageable patterns or categories of justifications involving TBox and ABox axioms. These categories represented meaningful domain errors to an expert panel of ICTM project knowledge engineers, who were able to use them to successfully determine the axioms that needed to be revised in order to fix the problem. All members of the expert panel agreed that the approach was useful for debugging and ensuring the quality of ICTM.

Entities:  

Mesh:

Year:  2014        PMID: 25954373      PMCID: PMC4420015     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  4 in total

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Authors:  J E Rogers
Journal:  Methods Inf Med       Date:  2006       Impact factor: 2.176

2.  Special issue on auditing of terminologies.

Authors:  J Geller; Y Perl; M Halper; R Cornet
Journal:  J Biomed Inform       Date:  2009-06       Impact factor: 6.317

3.  SNOMED RT: a reference terminology for health care.

Authors:  K A Spackman; K E Campbell; R A Côté
Journal:  Proc AMIA Annu Fall Symp       Date:  1997

4.  WebProtégé: A Collaborative Ontology Editor and Knowledge Acquisition Tool for the Web.

Authors:  Tania Tudorache; Csongor Nyulas; Natalya F Noy; Mark A Musen
Journal:  Semant Web       Date:  2013-01-01       Impact factor: 2.214

  4 in total
  2 in total

1.  Quality Assurance of Cancer Study Common Data Elements Using A Post-Coordination Approach.

Authors:  Guoqian Jiang; Harold R Solbrig; Eric Prud'hommeaux; Cui Tao; Chunhua Weng; Christopher G Chute
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

2.  Using description logics to evaluate the consistency of drug-class membership relations in NDF-RT.

Authors:  Rainer Winnenburg; Jonathan M Mortensen; Olivier Bodenreider
Journal:  J Biomed Semantics       Date:  2015-03-28
  2 in total

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