Literature DB >> 26052350

Analysis and Prediction of User Editing Patterns in Ontology Development Projects.

Hao Wang1, Tania Tudorache2, Dejing Dou1, Natalya F Noy2, Mark A Musen2.   

Abstract

The development of real-world ontologies is a complex undertaking, commonly involving a group of domain experts with different expertise that work together in a collaborative setting. These ontologies are usually large scale and have complex structures. To assist in the authoring process, ontology tools are key at making the editing process as streamlined as possible. Being able to predict confidently what the users are likely to do next as they edit an ontology will enable us to focus and structure the user interface accordingly and to facilitate more efficient interaction and information discovery. In this paper, we use data mining, specifically the association rule mining, to investigate whether we are able to predict the next editing operation that a user will make based on the change history. We simulated and evaluated continuous prediction across time using sliding window model. We used the association rule mining to generate patterns from the ontology change logs in the training window and tested these patterns on logs in the adjacent testing window. We also evaluated the impact of different training and testing window sizes on the prediction accuracies. At last, we evaluated our prediction accuracies across different user groups and different ontologies. Our results indicate that we can indeed predict the next editing operation a user is likely to make. We will use the discovered editing patterns to develop a recommendation module for our editing tools, and to design user interface components that better fit with the user editing behaviors.

Entities:  

Keywords:  Collaborative Ontology Development; Data Mining Association Rule Mining; Ontology; User Editing Pattern

Year:  2015        PMID: 26052350      PMCID: PMC4454427          DOI: 10.1007/s13740-014-0047-3

Source DB:  PubMed          Journal:  J Data Semant


  9 in total

1.  Creating the gene ontology resource: design and implementation.

Authors: 
Journal:  Genome Res       Date:  2001-08       Impact factor: 9.043

2.  Measuring the level of activity in community built bio-ontologies.

Authors:  James Malone; Robert Stevens
Journal:  J Biomed Inform       Date:  2012-04-25       Impact factor: 6.317

3.  Discovering beaten paths in collaborative ontology-engineering projects using Markov chains.

Authors:  Simon Walk; Philipp Singer; Markus Strohmaier; Tania Tudorache; Mark A Musen; Natalya F Noy
Journal:  J Biomed Inform       Date:  2014-06-17       Impact factor: 6.317

4.  How Ontologies are Made: Studying the Hidden Social Dynamics Behind Collaborative Ontology Engineering Projects.

Authors:  Markus Strohmaier; Simon Walk; Jan Pöschko; Daniel Lamprecht; Tania Tudorache; Csongor Nyulas; Mark A Musen; Natalya F Noy
Journal:  Web Semant       Date:  2013-05       Impact factor: 1.897

5.  NCI Thesaurus: a semantic model integrating cancer-related clinical and molecular information.

Authors:  Nicholas Sioutos; Sherri de Coronado; Margaret W Haber; Frank W Hartel; Wen-Ling Shaiu; Lawrence W Wright
Journal:  J Biomed Inform       Date:  2006-03-15       Impact factor: 6.317

6.  PragmatiX: An Interactive Tool for Visualizing the Creation Process Behind Collaboratively Engineered Ontologies.

Authors:  Simon Walk; Jan Pöschko; Markus Strohmaier; Keith Andrews; Tania Tudorache; Natalya F Noy; Csongor Nyulas; Mark A Musen
Journal:  Int J Semant Web Inf Syst       Date:  2013       Impact factor: 0.843

7.  WebProtégé: A Collaborative Ontology Editor and Knowledge Acquisition Tool for the Web.

Authors:  Tania Tudorache; Csongor Nyulas; Natalya F Noy; Mark A Musen
Journal:  Semant Web       Date:  2013-01-01       Impact factor: 2.214

8.  Predicting the extension of biomedical ontologies.

Authors:  Catia Pesquita; Francisco M Couto
Journal:  PLoS Comput Biol       Date:  2012-09-13       Impact factor: 4.475

9.  OnEX: Exploring changes in life science ontologies.

Authors:  Michael Hartung; Toralf Kirsten; Anika Gross; Erhard Rahm
Journal:  BMC Bioinformatics       Date:  2009-08-13       Impact factor: 3.169

  9 in total
  1 in total

Review 1.  Evolution of biomedical ontologies and mappings: Overview of recent approaches.

Authors:  Anika Groß; Cédric Pruski; Erhard Rahm
Journal:  Comput Struct Biotechnol J       Date:  2016-08-26       Impact factor: 7.271

  1 in total

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