Literature DB >> 24465189

PragmatiX: An Interactive Tool for Visualizing the Creation Process Behind Collaboratively Engineered Ontologies.

Simon Walk1, Jan Pöschko1, Markus Strohmaier1, Keith Andrews2, Tania Tudorache3, Natalya F Noy3, Csongor Nyulas3, Mark A Musen3.   

Abstract

With the emergence of tools for collaborative ontology engineering, more and more data about the creation process behind collaborative construction of ontologies is becoming available. Today, collaborative ontology engineering tools such as Collaborative Protégé offer rich and structured logs of changes, thereby opening up new challenges and opportunities to study and analyze the creation of collaboratively constructed ontologies. While there exists a plethora of visualization tools for ontologies, they have primarily been built to visualize aspects of the final product (the ontology) and not the collaborative processes behind construction (e.g. the changes made by contributors over time). To the best of our knowledge, there exists no ontology visualization tool today that focuses primarily on visualizing the history behind collaboratively constructed ontologies. Since the ontology engineering processes can influence the quality of the final ontology, we believe that visualizing process data represents an important stepping-stone towards better understanding of managing the collaborative construction of ontologies in the future. In this application paper, we present a tool - PragmatiX - which taps into structured change logs provided by tools such as Collaborative Protégé to visualize various pragmatic aspects of collaborative ontology engineering. The tool is aimed at managers and leaders of collaborative ontology engineering projects to help them in monitoring progress, in exploring issues and problems, and in tracking quality-related issues such as overrides and coordination among contributors. The paper makes the following contributions: (i) we present PragmatiX, a tool for visualizing the creation process behind collaboratively constructed ontologies (ii) we illustrate the functionality and generality of the tool by applying it to structured logs of changes of two large collaborative ontology-engineering projects and (iii) we conduct a heuristic evaluation of the tool with domain experts to uncover early design challenges and opportunities for improvement. Finally, we hope that this work sparks a new line of research on visualization tools for collaborative ontology engineering projects.

Entities:  

Keywords:  Collaborative Ontology Engineering; ontology engineering visualization; ontology evaluation; ontology monitoring; ontology tool; pragmatic analysis

Year:  2013        PMID: 24465189      PMCID: PMC3901413          DOI: 10.4018/jswis.2013010103

Source DB:  PubMed          Journal:  Int J Semant Web Inf Syst        ISSN: 1552-6283            Impact factor:   0.843


  2 in total

1.  The Gene Ontology (GO) database and informatics resource.

Authors:  M A Harris; J Clark; A Ireland; J Lomax; M Ashburner; R Foulger; K Eilbeck; S Lewis; B Marshall; C Mungall; J Richter; G M Rubin; J A Blake; C Bult; M Dolan; H Drabkin; J T Eppig; D P Hill; L Ni; M Ringwald; R Balakrishnan; J M Cherry; K R Christie; M C Costanzo; S S Dwight; S Engel; D G Fisk; J E Hirschman; E L Hong; R S Nash; A Sethuraman; C L Theesfeld; D Botstein; K Dolinski; B Feierbach; T Berardini; S Mundodi; S Y Rhee; R Apweiler; D Barrell; E Camon; E Dimmer; V Lee; R Chisholm; P Gaudet; W Kibbe; R Kishore; E M Schwarz; P Sternberg; M Gwinn; L Hannick; J Wortman; M Berriman; V Wood; N de la Cruz; P Tonellato; P Jaiswal; T Seigfried; R White
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  WebProtégé: A Collaborative Ontology Editor and Knowledge Acquisition Tool for the Web.

Authors:  Tania Tudorache; Csongor Nyulas; Natalya F Noy; Mark A Musen
Journal:  Semant Web       Date:  2013-01-01       Impact factor: 2.214

  2 in total
  3 in total

1.  Discovering beaten paths in collaborative ontology-engineering projects using Markov chains.

Authors:  Simon Walk; Philipp Singer; Markus Strohmaier; Tania Tudorache; Mark A Musen; Natalya F Noy
Journal:  J Biomed Inform       Date:  2014-06-17       Impact factor: 6.317

2.  Analysis and Prediction of User Editing Patterns in Ontology Development Projects.

Authors:  Hao Wang; Tania Tudorache; Dejing Dou; Natalya F Noy; Mark A Musen
Journal:  J Data Semant       Date:  2015-06

Review 3.  Evolution of biomedical ontologies and mappings: Overview of recent approaches.

Authors:  Anika Groß; Cédric Pruski; Erhard Rahm
Journal:  Comput Struct Biotechnol J       Date:  2016-08-26       Impact factor: 7.271

  3 in total

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