Literature DB >> 23805738

Computer simulations of the phase separation in model membranes.

Svetlana Baoukina1, Eduardo Mendez-Villuendas, W F Drew Bennett, D Peter Tieleman.   

Abstract

We used computer simulations to investigate the properties of model lipid membranes with coexisting phases. This is relevant for understanding lipid-lipid interactions underlying lateral organization in biological membranes. Molecular dynamics simulations with the MARTINI coarse-grained force field were employed to study lipid bilayers -40 nm in lateral dimension on a 20 micros time scale. The simulations retain near atomic-level detail and lipid chemical specificity, and allow formation of multiple domains of tens of nanometers in size. Using ternary lipid mixtures of saturated and unsaturated lipids and cholesterol, we reproduced the coexistence of the Lalpha/gel phases and the Lo/Ld phases. Phase transformation proceeded by either nucleation or spinodal decomposition. The properties of coexisting phases were characterized in detail, including partial lipid areas, composition, phase boundary and domain registry, based on Voronoi tessellation. We investigated variations of these properties with temperature and surface tension, and compared them to our recent simulations of lipid monolayers of the same size and composition. We found substantial overlap in bilayer and monolayer properties. Increasing the temperature in bilayers produced similar effects as increasing the surface tension in monolayers. This information can be used for interpreting experimental data on model membranes.

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Year:  2013        PMID: 23805738     DOI: 10.1039/c2fd20117h

Source DB:  PubMed          Journal:  Faraday Discuss        ISSN: 1359-6640            Impact factor:   4.008


  16 in total

1.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

2.  Multiscale modeling of four-component lipid mixtures: domain composition, size, alignment, and properties of the phase interface.

Authors:  David G Ackerman; Gerald W Feigenson
Journal:  J Phys Chem B       Date:  2015-01-22       Impact factor: 2.991

3.  Organization and Dynamics of Receptor Proteins in a Plasma Membrane.

Authors:  Heidi Koldsø; Mark S P Sansom
Journal:  J Am Chem Soc       Date:  2015-11-16       Impact factor: 15.419

4.  The mechanism of collapse of heterogeneous lipid monolayers.

Authors:  Svetlana Baoukina; Dmitri Rozmanov; Eduardo Mendez-Villuendas; D Peter Tieleman
Journal:  Biophys J       Date:  2014-09-02       Impact factor: 4.033

5.  Hysteresis and the Cholesterol Dependent Phase Transition in Binary Lipid Mixtures with the Martini Model.

Authors:  Clement Arnarez; Alexis Webb; Eric Rouvière; Edward Lyman
Journal:  J Phys Chem B       Date:  2016-12-15       Impact factor: 2.991

6.  Apoptotic Bax at Oxidatively Stressed Mitochondrial Membranes: Lipid Dynamics and Permeabilization.

Authors:  Artur Peter Günther Dingeldein; Šárka Pokorná; Martin Lidman; Tobias Sparrman; Radek Šachl; Martin Hof; Gerhard Gröbner
Journal:  Biophys J       Date:  2017-05-23       Impact factor: 4.033

7.  Inserting Small Molecules across Membrane Mixtures: Insight from the Potential of Mean Force.

Authors:  Alessia Centi; Arghya Dutta; Sapun H Parekh; Tristan Bereau
Journal:  Biophys J       Date:  2020-02-04       Impact factor: 4.033

8.  Fluid Phase Coexistence in Biological Membrane: Insights from Local Nonaffine Deformation of Lipids.

Authors:  Sahithya S Iyer; Madhusmita Tripathy; Anand Srivastava
Journal:  Biophys J       Date:  2018-07-03       Impact factor: 4.033

9.  Gangliosides Destabilize Lipid Phase Separation in Multicomponent Membranes.

Authors:  Yang Liu; Jonathan Barnoud; Siewert J Marrink
Journal:  Biophys J       Date:  2019-09-06       Impact factor: 4.033

10.  Hexagonal Substructure and Hydrogen Bonding in Liquid-Ordered Phases Containing Palmitoyl Sphingomyelin.

Authors:  Alexander J Sodt; Richard W Pastor; Edward Lyman
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

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