Literature DB >> 25564922

Multiscale modeling of four-component lipid mixtures: domain composition, size, alignment, and properties of the phase interface.

David G Ackerman1, Gerald W Feigenson1.   

Abstract

Simplified lipid mixtures are often used to model the complex behavior of the cell plasma membrane. Indeed, as few as four components-a high-melting lipid, a nandomain-inducing low-melting lipid, a macrodomain-inducing low-melting lipid, and cholesterol (chol)-can give rise to a wide range of domain sizes and patterns that are highly sensitive to lipid compositions. Although these systems are studied extensively with experiments, the molecular-level details governing their phase behavior are not yet known. We address this issue by using molecular dynamics simulations to analyze how phase separation evolves in a four-component system as it transitions from small domains to large domains. To do so, we fix concentrations of the high-melting lipid 16:0,16:0-phosphatidylcholine (DPPC) and chol, and incrementally replace the nanodomain-inducing low-melting lipid 16:0,18:2-PC (PUPC) by the macrodomain-inducing low-melting lipid 18:2,18:2-PC (DUPC). Coarse-grained simulations of this four-component system reveal that lipid demixing increases as the amount of DUPC increases. Additionally, we find that domain size and interleaflet alignment change sharply over a narrow range of replacement of PUPC by DUPC, indicating that intraleaflet and interleaflet behaviors are coupled. Corresponding united atom simulations show that only lipids within ∼2 nm of the phase interface are significantly perturbed regardless of domain composition or size. Thus, whereas the fraction of interface-perturbed lipids is negligible for large domains, it is significant for smaller ones. Together, these results reveal characteristic traits of bilayer thermodynamic behavior in four-component mixtures, and provide a baseline for investigation of the effects of proteins and other lipids on membrane phase properties.

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Year:  2015        PMID: 25564922      PMCID: PMC4377067          DOI: 10.1021/jp511083z

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  59 in total

1.  Polyunsaturated and saturated phospholipids in mixed bilayers: a study from the molecular scale to the lateral lipid organization.

Authors:  C Rosetti; C Pastorino
Journal:  J Phys Chem B       Date:  2010-12-28       Impact factor: 2.991

2.  Effect of line tension on the lateral organization of lipid membranes.

Authors:  Ana J García-Sáez; Salvatore Chiantia; Petra Schwille
Journal:  J Biol Chem       Date:  2007-09-11       Impact factor: 5.157

3.  Domain shapes and patterns: the phenomenology of modulated phases.

Authors:  M Seul; D Andelman
Journal:  Science       Date:  1995-01-27       Impact factor: 47.728

4.  Transmembrane helices can induce domain formation in crowded model membranes.

Authors:  Jan Domański; Siewert J Marrink; Lars V Schäfer
Journal:  Biochim Biophys Acta       Date:  2011-08-22

5.  Complex roles of hybrid lipids in the composition, order, and size of lipid membrane domains.

Authors:  Ebrahim Hassan-Zadeh; Eda Baykal-Caglar; Mohammad Alwarawrah; Juyang Huang
Journal:  Langmuir       Date:  2014-01-31       Impact factor: 3.882

6.  Atomistic simulations of a multicomponent asymmetric lipid bilayer.

Authors:  Anirban Polley; Satyavani Vemparala; Madan Rao
Journal:  J Phys Chem B       Date:  2012-11-01       Impact factor: 2.991

7.  Molecular dynamics simulations of stratum corneum lipid models: fatty acids and cholesterol.

Authors:  M Höltje; T Förster; B Brandt; T Engels; W von Rybinski; H D Höltje
Journal:  Biochim Biophys Acta       Date:  2001-03-09

8.  Lipid packing drives the segregation of transmembrane helices into disordered lipid domains in model membranes.

Authors:  Lars V Schäfer; Djurre H de Jong; Andrea Holt; Andrzej J Rzepiela; Alex H de Vries; Bert Poolman; J Antoinette Killian; Siewert J Marrink
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-04       Impact factor: 11.205

9.  Dynamic sorting of lipids and proteins in membrane tubes with a moving phase boundary.

Authors:  Michael Heinrich; Aiwei Tian; Cinzia Esposito; Tobias Baumgart
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-05       Impact factor: 11.205

10.  Key molecular requirements for raft formation in lipid/cholesterol membranes.

Authors:  Davit Hakobyan; Andreas Heuer
Journal:  PLoS One       Date:  2014-02-03       Impact factor: 3.240

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  27 in total

1.  Effects of Passive Phospholipid Flip-Flop and Asymmetric External Fields on Bilayer Phase Equilibria.

Authors:  John J Williamson; Peter D Olmsted
Journal:  Biophys J       Date:  2018-10-10       Impact factor: 4.033

2.  Line Tension Controls Liquid-Disordered + Liquid-Ordered Domain Size Transition in Lipid Bilayers.

Authors:  Rebecca D Usery; Thais A Enoki; Sanjula P Wickramasinghe; Michael D Weiner; Wen-Chyan Tsai; Mary B Kim; Shu Wang; Thomas L Torng; David G Ackerman; Frederick A Heberle; John Katsaras; Gerald W Feigenson
Journal:  Biophys J       Date:  2017-04-11       Impact factor: 4.033

3.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

4.  Exploring the impact of proteins on the line tension of a phase-separating ternary lipid mixture.

Authors:  Asanga Bandara; Afra Panahi; George A Pantelopulos; Tetsuro Nagai; John E Straub
Journal:  J Chem Phys       Date:  2019-05-28       Impact factor: 3.488

5.  A mixed alchemical and equilibrium dynamics to simulate heterogeneous dense fluids: Illustrations for Lennard-Jones mixtures and phospholipid membranes.

Authors:  Arman Fathizadeh; Ron Elber
Journal:  J Chem Phys       Date:  2018-08-21       Impact factor: 3.488

6.  Regimes of Complex Lipid Bilayer Phases Induced by Cholesterol Concentration in MD Simulation.

Authors:  George A Pantelopulos; John E Straub
Journal:  Biophys J       Date:  2018-10-19       Impact factor: 4.033

7.  Domain Stability in Biomimetic Membranes Driven by Lipid Polyunsaturation.

Authors:  Xubo Lin; Joseph H Lorent; Allison D Skinkle; Kandice R Levental; M Neal Waxham; Alemayehu A Gorfe; Ilya Levental
Journal:  J Phys Chem B       Date:  2016-11-10       Impact factor: 2.991

8.  Inserting Small Molecules across Membrane Mixtures: Insight from the Potential of Mean Force.

Authors:  Alessia Centi; Arghya Dutta; Sapun H Parekh; Tristan Bereau
Journal:  Biophys J       Date:  2020-02-04       Impact factor: 4.033

Review 9.  The Continuing Mystery of Lipid Rafts.

Authors:  Ilya Levental; Sarah Veatch
Journal:  J Mol Biol       Date:  2016-08-26       Impact factor: 5.469

10.  Gangliosides Destabilize Lipid Phase Separation in Multicomponent Membranes.

Authors:  Yang Liu; Jonathan Barnoud; Siewert J Marrink
Journal:  Biophys J       Date:  2019-09-06       Impact factor: 4.033

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