Literature DB >> 32075746

Inserting Small Molecules across Membrane Mixtures: Insight from the Potential of Mean Force.

Alessia Centi1, Arghya Dutta1, Sapun H Parekh2, Tristan Bereau3.   

Abstract

Small solutes have been shown to alter the lateral organization of cell membranes and reconstituted phospholipid bilayers; however, the mechanisms by which these changes happen are still largely unknown. Traditionally, both experiment and simulation studies have been restricted to testing only a few compounds at a time, failing to identify general molecular descriptors or chemical properties that would allow extrapolating beyond the subset of considered solutes. In this work, we probe the competing energetics of inserting a solute in different membrane environments by means of the potential of mean force. We show that these calculations can be used as a computationally efficient proxy to establish whether a solute will stabilize or destabilize domain phase separation. Combined with umbrella-sampling simulations and coarse-grained molecular dynamics simulations, we are able to screen solutes across a wide range of chemistries and polarities. Our results indicate that for the system under consideration, preferential partitioning and therefore effectiveness in altering membrane phase separation are strictly linked to the location of insertion in the bilayer (i.e., midplane or interface). Our approach represents a fast and simple tool for obtaining structural and thermodynamic insight into the partitioning of small molecules between lipid domains and its relation to phase separation, ultimately providing a platform for identifying the key determinants of this process.
Copyright © 2020 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2020        PMID: 32075746      PMCID: PMC7091563          DOI: 10.1016/j.bpj.2020.01.039

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  49 in total

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3.  Multiscale modeling of four-component lipid mixtures: domain composition, size, alignment, and properties of the phase interface.

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4.  Computer simulations of the phase separation in model membranes.

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Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-05       Impact factor: 11.205

6.  Lipid organization of the plasma membrane.

Authors:  Helgi I Ingólfsson; Manuel N Melo; Floris J van Eerden; Clément Arnarez; Cesar A Lopez; Tsjerk A Wassenaar; Xavier Periole; Alex H de Vries; D Peter Tieleman; Siewert J Marrink
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7.  Cholesterol-phosphatidylcholine interactions in multilamellar vesicles.

Authors:  B R Lentz; D A Barrow; M Hoechli
Journal:  Biochemistry       Date:  1980-04-29       Impact factor: 3.162

8.  Interaction of hydrophobic polymers with model lipid bilayers.

Authors:  D Bochicchio; E Panizon; L Monticelli; G Rossi
Journal:  Sci Rep       Date:  2017-07-25       Impact factor: 4.379

9.  Balancing Force Field Protein-Lipid Interactions To Capture Transmembrane Helix-Helix Association.

Authors:  Jan Domański; Mark S P Sansom; Phillip J Stansfeld; Robert B Best
Journal:  J Chem Theory Comput       Date:  2018-02-09       Impact factor: 6.578

10.  Drug-Membrane Permeability across Chemical Space.

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  4 in total

1.  Inserting Small Molecules across Membrane Mixtures: Insight from the Potential of Mean Force.

Authors:  Alessia Centi; Arghya Dutta; Sapun H Parekh; Tristan Bereau
Journal:  Biophys J       Date:  2020-02-04       Impact factor: 4.033

2.  Data-driven discovery of cardiolipin-selective small molecules by computational active learning.

Authors:  Bernadette Mohr; Kirill Shmilovich; Isabel S Kleinwächter; Dirk Schneider; Andrew L Ferguson; Tristan Bereau
Journal:  Chem Sci       Date:  2022-03-02       Impact factor: 9.969

3.  Heptanol-mediated phase separation determines phase preference of molecules in live cell membranes.

Authors:  Anjali Gupta; Danqin Lu; Harikrushnan Balasubramanian; Zhang Chi; Thorsten Wohland
Journal:  J Lipid Res       Date:  2022-04-28       Impact factor: 6.676

4.  The Bacteriostatic Activity of 2-Phenylethanol Derivatives Correlates with Membrane Binding Affinity.

Authors:  Isabel S Kleinwächter; Stefanie Pannwitt; Alessia Centi; Nadja Hellmann; Eckhard Thines; Tristan Bereau; Dirk Schneider
Journal:  Membranes (Basel)       Date:  2021-03-31
  4 in total

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