Literature DB >> 24434036

Advanced imaging techniques for the study of plant growth and development.

Rosangela Sozzani1, Wolfgang Busch2, Edgar P Spalding3, Philip N Benfey4.   

Abstract

A variety of imaging methodologies are being used to collect data for quantitative studies of plant growth and development from living plants. Multi-level data, from macroscopic to molecular, and from weeks to seconds, can be acquired. Furthermore, advances in parallelized and automated image acquisition enable the throughput to capture images from large populations of plants under specific growth conditions. Image-processing capabilities allow for 3D or 4D reconstruction of image data and automated quantification of biological features. These advances facilitate the integration of imaging data with genome-wide molecular data to enable systems-level modeling.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  imaging techniques; plant growth and development; systems-level modeling

Mesh:

Year:  2014        PMID: 24434036      PMCID: PMC4008707          DOI: 10.1016/j.tplants.2013.12.003

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  69 in total

1.  Automated analysis of hypocotyl growth dynamics during shade avoidance in Arabidopsis.

Authors:  Benjamin Cole; Steve A Kay; Joanne Chory
Journal:  Plant J       Date:  2011-02-02       Impact factor: 6.417

2.  Developmental patterning by mechanical signals in Arabidopsis.

Authors:  Olivier Hamant; Marcus G Heisler; Henrik Jönsson; Pawel Krupinski; Magalie Uyttewaal; Plamen Bokov; Francis Corson; Patrik Sahlin; Arezki Boudaoud; Elliot M Meyerowitz; Yves Couder; Jan Traas
Journal:  Science       Date:  2008-12-12       Impact factor: 47.728

3.  Cell identity regulators link development and stress responses in the Arabidopsis root.

Authors:  Anjali S Iyer-Pascuzzi; Terry Jackson; Hongchang Cui; Jalean J Petricka; Wolfgang Busch; Hironaka Tsukagoshi; Philip N Benfey
Journal:  Dev Cell       Date:  2011-10-18       Impact factor: 12.270

Review 4.  In vivo imaging of Ca2+, pH, and reactive oxygen species using fluorescent probes in plants.

Authors:  Sarah J Swanson; Won-Gyu Choi; Alexandra Chanoca; Simon Gilroy
Journal:  Annu Rev Plant Biol       Date:  2011       Impact factor: 26.379

5.  RooTrak: automated recovery of three-dimensional plant root architecture in soil from x-ray microcomputed tomography images using visual tracking.

Authors:  Stefan Mairhofer; Susan Zappala; Saoirse R Tracy; Craig Sturrock; Malcolm Bennett; Sacha J Mooney; Tony Pridmore
Journal:  Plant Physiol       Date:  2011-12-21       Impact factor: 8.340

6.  Three-dimensional root phenotyping with a novel imaging and software platform.

Authors:  Randy T Clark; Robert B MacCurdy; Janelle K Jung; Jon E Shaff; Susan R McCouch; Daniel J Aneshansley; Leon V Kochian
Journal:  Plant Physiol       Date:  2011-03-31       Impact factor: 8.340

7.  Dynamics of seedling growth acclimation towards altered light conditions can be quantified via GROWSCREEN: a setup and procedure designed for rapid optical phenotyping of different plant species.

Authors:  Achim Walter; Hanno Scharr; Frank Gilmer; Rainer Zierer; Kerstin A Nagel; Michaela Ernst; Anika Wiese; Olivia Virnich; Maja M Christ; Beate Uhlig; Sybille Jünger; Uli Schurr
Journal:  New Phytol       Date:  2007       Impact factor: 10.151

8.  Genetic control of organ shape and tissue polarity.

Authors:  Amelia A Green; J Richard Kennaway; Andrew I Hanna; J Andrew Bangham; Enrico Coen
Journal:  PLoS Biol       Date:  2010-11-09       Impact factor: 8.029

9.  A novel image-analysis technique for kinematic study of growth and curvature.

Authors:  Paramita Basu; Anupam Pal; Jonathan P Lynch; Kathleen M Brown
Journal:  Plant Physiol       Date:  2007-08-24       Impact factor: 8.340

10.  Lateral root morphogenesis is dependent on the mechanical properties of the overlaying tissues.

Authors:  Mikaël Lucas; Kim Kenobi; Daniel von Wangenheim; Ute Voβ; Kamal Swarup; Ive De Smet; Daniël Van Damme; Tara Lawrence; Benjamin Péret; Eric Moscardi; Daniel Barbeau; Christophe Godin; David Salt; Soazig Guyomarc'h; Ernst H K Stelzer; Alexis Maizel; Laurent Laplaze; Malcolm J Bennett
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-11       Impact factor: 11.205

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  13 in total

1.  PaCeQuant: A Tool for High-Throughput Quantification of Pavement Cell Shape Characteristics.

Authors:  Birgit Möller; Yvonne Poeschl; Romina Plötner; Katharina Bürstenbinder
Journal:  Plant Physiol       Date:  2017-09-20       Impact factor: 8.340

2.  Image-based high-throughput field phenotyping of crop roots.

Authors:  Alexander Bucksch; James Burridge; Larry M York; Abhiram Das; Eric Nord; Joshua S Weitz; Jonathan P Lynch
Journal:  Plant Physiol       Date:  2014-09-03       Impact factor: 8.340

Review 3.  A Case for Distributed Control of Local Stem Cell Behavior in Plants.

Authors:  Ramin Rahni; Idan Efroni; Kenneth D Birnbaum
Journal:  Dev Cell       Date:  2016-09-26       Impact factor: 12.270

4.  DIRT/3D: 3D root phenotyping for field-grown maize (Zea mays).

Authors:  Suxing Liu; Carlos Sherard Barrow; Meredith Hanlon; Jonathan P Lynch; Alexander Bucksch
Journal:  Plant Physiol       Date:  2021-10-05       Impact factor: 8.340

5.  Multiscale imaging of plants: current approaches and challenges.

Authors:  David Rousseau; Yann Chéné; Etienne Belin; Georges Semaan; Ghassen Trigui; Karima Boudehri; Florence Franconi; François Chapeau-Blondeau
Journal:  Plant Methods       Date:  2015-02-10       Impact factor: 4.993

6.  Plant chemical biology: are we meeting the promise?

Authors:  Glenn R Hicks; Natasha V Raikhel
Journal:  Front Plant Sci       Date:  2014-09-08       Impact factor: 5.753

Review 7.  Use of Natural Diversity and Biotechnology to Increase the Quality and Nutritional Content of Tomato and Grape.

Authors:  Quentin Gascuel; Gianfranco Diretto; Antonio J Monforte; Ana M Fortes; Antonio Granell
Journal:  Front Plant Sci       Date:  2017-05-12       Impact factor: 5.753

8.  FlowerMorphology: fully automatic flower morphometry software.

Authors:  Sergey M Rozov; Elena V Deineko; Igor V Deyneko
Journal:  Planta       Date:  2018-02-02       Impact factor: 4.116

Review 9.  Advanced phenotyping and phenotype data analysis for the study of plant growth and development.

Authors:  Md Matiur Rahaman; Dijun Chen; Zeeshan Gillani; Christian Klukas; Ming Chen
Journal:  Front Plant Sci       Date:  2015-08-10       Impact factor: 5.753

10.  Automated interpretation of 3D laserscanned point clouds for plant organ segmentation.

Authors:  Mirwaes Wahabzada; Stefan Paulus; Kristian Kersting; Anne-Katrin Mahlein
Journal:  BMC Bioinformatics       Date:  2015-08-08       Impact factor: 3.169

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