Literature DB >> 23749255

The potential use of bacterial community succession in forensics as described by high throughput metagenomic sequencing.

Jennifer L Pechal1, Tawni L Crippen, M Eric Benbow, Aaron M Tarone, Scot Dowd, Jeffery K Tomberlin.   

Abstract

Decomposition studies of vertebrate remains primarily focus on data that can be seen with the naked eye, such as arthropod or vertebrate scavenger activity, with little regard for what might be occurring with the microorganism community. Here, we discuss the necrobiome, or community of organisms associated with the decomposition of remains, specifically, the "epinecrotic" bacterial community succession throughout decomposition of vertebrate carrion. Pyrosequencing was used to (1) detect and identify bacterial community abundance patterns that described discrete time points of the decomposition process and (2) identify bacterial taxa important for estimating physiological time, a time-temperature metric that is often commensurate with minimum post-mortem interval estimates, via thermal summation models. There were significant bacterial community structure differences in taxon richness and relative abundance patterns through the decomposition process at both phylum and family taxonomic classification levels. We found a significant negative linear relationship for overall phylum and family taxon richness as decomposition progressed. Additionally, we developed a statistical model using high throughput sequencing data of epinecrotic bacterial communities on vertebrate remains that explained 94.4 % of the time since placement of remains in the field, which was within 2-3 h of death. These bacteria taxa are potentially useful for estimating the minimum post-mortem interval. Lastly, we provide a new framework and standard operating procedure of how this novel approach of using high throughput metagenomic sequencing has remarkable potential as a new forensic tool. Documenting and identifying differences in bacterial communities is key to advancing knowledge of the carrion necrobiome and its applicability in forensic science.

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Year:  2013        PMID: 23749255     DOI: 10.1007/s00414-013-0872-1

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  68 in total

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2.  Using accumulated degree-days to estimate the postmortem interval from decomposed human remains.

Authors:  Mary S Megyesi; Stephen P Nawrocki; Neal H Haskell
Journal:  J Forensic Sci       Date:  2005-05       Impact factor: 1.832

3.  Effects of temperature on development of Phormia regina (Diptera: Calliphoridae) and use of developmental data in determining time intervals in forensic entomology.

Authors:  P D Nabity; L G Higley; T M Heng-Moss
Journal:  J Med Entomol       Date:  2006-11       Impact factor: 2.278

4.  Cadaveric volatile organic compounds released by decaying pig carcasses (Sus domesticus L.) in different biotopes.

Authors:  J Dekeirsschieter; F J Verheggen; M Gohy; F Hubrecht; L Bourguignon; G Lognay; E Haubruge
Journal:  Forensic Sci Int       Date:  2009-05-06       Impact factor: 2.395

5.  Antimicrobial strategies in burying beetles breeding on carrion.

Authors:  D E Rozen; D J P Engelmoer; P T Smiseth
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-10       Impact factor: 11.205

6.  The potential to determine a postmortem submersion interval based on algal/diatom diversity on decomposing mammalian carcasses in brackish ponds in Delaware.

Authors:  Kathryn A Zimmerman; John R Wallace
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7.  Assessment of bacterial diversity in the cattle tick Rhipicephalus (Boophilus) microplus through tag-encoded pyrosequencing.

Authors:  Renato Andreotti; Adalberto A Pérez de León; Scot E Dowd; Felix D Guerrero; Kylie G Bendele; Glen A Scoles
Journal:  BMC Microbiol       Date:  2011-01-06       Impact factor: 3.605

8.  Effects of temperature and tissue type on the development of Cochliomyia macellaria (Diptera: Calliphoridae).

Authors:  Stacy A Boatright; Jeffery K Tomberlin
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Review 9.  Metagenomic pyrosequencing and microbial identification.

Authors:  Joseph F Petrosino; Sarah Highlander; Ruth Ann Luna; Richard A Gibbs; James Versalovic
Journal:  Clin Chem       Date:  2009-03-05       Impact factor: 8.327

10.  Bacterial community variation in human body habitats across space and time.

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  56 in total

1.  Carcass mass has little influence on the structure of gravesoil microbial communities.

Authors:  Sophie Weiss; David O Carter; Jessica L Metcalf; Rob Knight
Journal:  Int J Legal Med       Date:  2015-05-30       Impact factor: 2.686

2.  Initial insights into bacterial succession during human decomposition.

Authors:  Embriette R Hyde; Daniel P Haarmann; Joseph F Petrosino; Aaron M Lynne; Sibyl R Bucheli
Journal:  Int J Legal Med       Date:  2014-11-28       Impact factor: 2.686

3.  Seasonal variation of postmortem microbial communities.

Authors:  David O Carter; Jessica L Metcalf; Alexander Bibat; Rob Knight
Journal:  Forensic Sci Med Pathol       Date:  2015-03-04       Impact factor: 2.007

4.  Potential use of high-throughput sequencing of bacterial communities for postmortem submersion interval estimation.

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Journal:  Braz J Microbiol       Date:  2019-07-30       Impact factor: 2.476

Review 5.  An interdisciplinary review of the thanatomicrobiome in human decomposition.

Authors:  Gulnaz T Javan; Sheree J Finley; Sari Tuomisto; Ashley Hall; M Eric Benbow; DeEtta Mills
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Review 6.  Microbiomes in forensic botany: a review.

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Review 7.  Increasing the reach of forensic genetics with massively parallel sequencing.

Authors:  Bruce Budowle; Sarah E Schmedes; Frank R Wendt
Journal:  Forensic Sci Med Pathol       Date:  2017-06-19       Impact factor: 2.007

Review 8.  Microbial communities associated with human decomposition and their potential use as postmortem clocks.

Authors:  Sheree J Finley; M Eric Benbow; Gulnaz T Javan
Journal:  Int J Legal Med       Date:  2014-08-17       Impact factor: 2.686

9.  Vertebrate decomposition is accelerated by soil microbes.

Authors:  Christian L Lauber; Jessica L Metcalf; Kyle Keepers; Gail Ackermann; David O Carter; Rob Knight
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Review 10.  Expansion of Microbial Forensics.

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