Literature DB >> 26912746

Expansion of Microbial Forensics.

Sarah E Schmedes1, Antti Sajantila2, Bruce Budowle3.   

Abstract

Microbial forensics has been defined as the discipline of applying scientific methods to the analysis of evidence related to bioterrorism, biocrimes, hoaxes, or the accidental release of a biological agent or toxin for attribution purposes. Over the past 15 years, technology, particularly massively parallel sequencing, and bioinformatics advances now allow the characterization of microorganisms for a variety of human forensic applications, such as human identification, body fluid characterization, postmortem interval estimation, and biocrimes involving tracking of infectious agents. Thus, microbial forensics should be more broadly described as the discipline of applying scientific methods to the analysis of microbial evidence in criminal and civil cases for investigative purposes.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Entities:  

Mesh:

Year:  2016        PMID: 26912746      PMCID: PMC4963497          DOI: 10.1128/JCM.00046-16

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  104 in total

1.  Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

Authors:  T Z DeSantis; P Hugenholtz; N Larsen; M Rojas; E L Brodie; K Keller; T Huber; D Dalevi; P Hu; G L Andersen
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

Review 2.  Criteria for validation of methods in microbial forensics.

Authors:  Bruce Budowle; Steven E Schutzer; Stephen A Morse; Kenneth F Martinez; Ranajit Chakraborty; Babetta L Marrone; Sharon L Messenger; Randall S Murch; Paul J Jackson; Phillip Williamson; Rockne Harmon; Stephan P Velsko
Journal:  Appl Environ Microbiol       Date:  2008-07-25       Impact factor: 4.792

3.  Body fluid identification by integrated analysis of DNA methylation and body fluid-specific microbial DNA.

Authors:  Ajin Choi; Kyoung-Jin Shin; Woo Ick Yang; Hwan Young Lee
Journal:  Int J Legal Med       Date:  2013-09-20       Impact factor: 2.686

4.  Infectious complications in drug addicts: seven-year review of 269 hospitalized narcotics abusers in Switzerland.

Authors:  C Scheidegger; W Zimmerli
Journal:  Rev Infect Dis       Date:  1989 May-Jun

5.  Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing.

Authors:  Craig A Cummings; Christina A Bormann Chung; Rixun Fang; Melissa Barker; Pius Brzoska; Phillip C Williamson; Jodi Beaudry; Molly Matthews; James Schupp; David M Wagner; Dawn Birdsell; Amy J Vogler; Manohar R Furtado; Paul Keim; Bruce Budowle
Journal:  Investig Genet       Date:  2010-09-01

6.  Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak.

Authors:  Rene S Hendriksen; Lance B Price; James M Schupp; John D Gillece; Rolf S Kaas; David M Engelthaler; Valeria Bortolaia; Talima Pearson; Andrew E Waters; Bishnu Prasad Upadhyay; Sirjana Devi Shrestha; Shailaja Adhikari; Geeta Shakya; Paul S Keim; Frank M Aarestrup
Journal:  mBio       Date:  2011-09-01       Impact factor: 7.867

Review 7.  Risks of Antibiotic Exposures Early in Life on the Developing Microbiome.

Authors:  Anjelique Schulfer; Martin J Blaser
Journal:  PLoS Pathog       Date:  2015-07-02       Impact factor: 6.823

8.  PhyloSift: phylogenetic analysis of genomes and metagenomes.

Authors:  Aaron E Darling; Guillaume Jospin; Eric Lowe; Frederick A Matsen; Holly M Bik; Jonathan A Eisen
Journal:  PeerJ       Date:  2014-01-09       Impact factor: 2.984

9.  mlstdbNet - distributed multi-locus sequence typing (MLST) databases.

Authors:  Keith A Jolley; Man-Suen Chan; Martin C J Maiden
Journal:  BMC Bioinformatics       Date:  2004-07-01       Impact factor: 3.169

Review 10.  Validation of high throughput sequencing and microbial forensics applications.

Authors:  Bruce Budowle; Nancy D Connell; Anna Bielecka-Oder; Rita R Colwell; Cindi R Corbett; Jacqueline Fletcher; Mats Forsman; Dana R Kadavy; Alemka Markotic; Stephen A Morse; Randall S Murch; Antti Sajantila; Sarah E Schmedes; Krista L Ternus; Stephen D Turner; Samuel Minot
Journal:  Investig Genet       Date:  2014-07-30
View more
  16 in total

Review 1.  Increasing the reach of forensic genetics with massively parallel sequencing.

Authors:  Bruce Budowle; Sarah E Schmedes; Frank R Wendt
Journal:  Forensic Sci Med Pathol       Date:  2017-06-19       Impact factor: 2.007

2.  The Future of Whole-Genome Sequencing for Public Health and the Clinic.

Authors:  Marc W Allard
Journal:  J Clin Microbiol       Date:  2016-06-15       Impact factor: 5.948

Review 3.  Forensic Analysis of Human Microbiome in Skin and Body Fluids Based on Geographic Location.

Authors:  Hye-Won Cho; Yong-Bin Eom
Journal:  Front Cell Infect Microbiol       Date:  2021-08-12       Impact factor: 5.293

4.  Forensic Human Identification Using Skin Microbiomes.

Authors:  Sarah E Schmedes; August E Woerner; Bruce Budowle
Journal:  Appl Environ Microbiol       Date:  2017-10-31       Impact factor: 4.792

Review 5.  Forensic genetics and genomics: Much more than just a human affair.

Authors:  Miguel Arenas; Filipe Pereira; Manuela Oliveira; Nadia Pinto; Alexandra M Lopes; Veronica Gomes; Angel Carracedo; Antonio Amorim
Journal:  PLoS Genet       Date:  2017-09-21       Impact factor: 5.917

6.  Help, hope and hype: ethical considerations of human microbiome research and applications.

Authors:  Yonghui Ma; Hua Chen; Canhui Lan; Jianlin Ren
Journal:  Protein Cell       Date:  2018-05       Impact factor: 14.870

Review 7.  Biowarfare, bioterrorism and biocrime: A historical overview on microbial harmful applications.

Authors:  Manuela Oliveira; Gabriella Mason-Buck; David Ballard; Wojciech Branicki; António Amorim
Journal:  Forensic Sci Int       Date:  2020-06-20       Impact factor: 2.395

Review 8.  Towards a genomics-informed, real-time, global pathogen surveillance system.

Authors:  Jennifer L Gardy; Nicholas J Loman
Journal:  Nat Rev Genet       Date:  2017-11-13       Impact factor: 53.242

9.  Variant site strain typer (VaST): efficient strain typing using a minimal number of variant genomic sites.

Authors:  Tara N Furstenau; Jill H Cocking; Jason W Sahl; Viacheslav Y Fofanov
Journal:  BMC Bioinformatics       Date:  2018-06-11       Impact factor: 3.169

Review 10.  Accelerating the sustainable development goals through microbiology: some efforts and opportunities.

Authors:  Omololu E Fagunwa; Afolake A Olanbiwoninu
Journal:  Access Microbiol       Date:  2020-03-23
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.