Literature DB >> 23744341

Ultrafast, accurate, and robust localization of anisotropic dipoles.

Yongdeng Zhang1, Lusheng Gu, Hao Chang, Wei Ji, Yan Chen, Mingshu Zhang, Lu Yang, Bei Liu, Liangyi Chen, Tao Xu.   

Abstract

The resolution of single molecule localization imaging techniques largely depends on the precision of localization algorithms. However, the commonly used Gaussian function is not appropriate for anisotropic dipoles because it is not the true point spread function. We derived the theoretical point spread function of tilted dipoles with restricted mobility and developed an algorithm based on an artificial neural network for estimating the localization, orientation and mobility of individual dipoles. Compared with fitting-based methods, our algorithm demonstrated ultrafast speed and higher accuracy, reduced sensitivity to defocusing, strong robustness and adaptability, making it an optimal choice for both two-dimensional and three-dimensional super-resolution imaging analysis.

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Year:  2013        PMID: 23744341      PMCID: PMC4875543          DOI: 10.1007/s13238-013-3904-1

Source DB:  PubMed          Journal:  Protein Cell        ISSN: 1674-800X            Impact factor:   14.870


  25 in total

1.  Fluorescence microscopy for simultaneous observation of 3D orientation and movement and its application to quantum rod-tagged myosin V.

Authors:  Masashi Ohmachi; Yasunori Komori; Atsuko H Iwane; Fumihiko Fujii; Takashi Jin; Toshio Yanagida
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-19       Impact factor: 11.205

2.  Model-independent analysis of the orientation of fluorescent probes with restricted mobility in muscle fibers.

Authors:  R E Dale; S C Hopkins; U A an der Heide; T Marszałek; M Irving; Y E Goldman
Journal:  Biophys J       Date:  1999-03       Impact factor: 4.033

3.  Molecular orientation affects localization accuracy in superresolution far-field fluorescence microscopy.

Authors:  Johann Engelhardt; Jan Keller; Patrick Hoyer; Matthias Reuss; Thorsten Staudt; Stefan W Hell
Journal:  Nano Lett       Date:  2010-12-06       Impact factor: 11.189

4.  Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure.

Authors:  Gleb Shtengel; James A Galbraith; Catherine G Galbraith; Jennifer Lippincott-Schwartz; Jennifer M Gillette; Suliana Manley; Rachid Sougrat; Clare M Waterman; Pakorn Kanchanawong; Michael W Davidson; Richard D Fetter; Harald F Hess
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-06       Impact factor: 11.205

5.  Three-dimensional sub-100 nm resolution fluorescence microscopy of thick samples.

Authors:  Manuel F Juette; Travis J Gould; Mark D Lessard; Michael J Mlodzianoski; Bhupendra S Nagpure; Brian T Bennett; Samuel T Hess; Joerg Bewersdorf
Journal:  Nat Methods       Date:  2008-05-11       Impact factor: 28.547

6.  Polarization effect on position accuracy of fluorophore localization.

Authors:  Joerg Enderlein; Erdal Toprak; Paul R Selvin
Journal:  Opt Express       Date:  2006-09-04       Impact factor: 3.894

7.  Two-color nanoscopy of three-dimensional volumes by 4Pi detection of stochastically switched fluorophores.

Authors:  Daniel Aquino; Andreas Schönle; Claudia Geisler; Claas V Middendorff; Christian A Wurm; Yosuke Okamura; Thorsten Lang; Stefan W Hell; Alexander Egner
Journal:  Nat Methods       Date:  2011-03-13       Impact factor: 28.547

8.  A unique series of reversibly switchable fluorescent proteins with beneficial properties for various applications.

Authors:  Hao Chang; Mingshu Zhang; Wei Ji; Juanjuan Chen; Yongdeng Zhang; Bei Liu; Jingze Lu; Junlong Zhang; Pingyong Xu; Tao Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-28       Impact factor: 11.205

9.  Steady-state polarization from cylindrically symmetric fluorophores undergoing rapid restricted motion.

Authors:  M Irving
Journal:  Biophys J       Date:  1996-04       Impact factor: 4.033

10.  A bright and photostable photoconvertible fluorescent protein.

Authors:  Sean A McKinney; Christopher S Murphy; Kristin L Hazelwood; Michael W Davidson; Loren L Looger
Journal:  Nat Methods       Date:  2009-01-25       Impact factor: 28.547

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  6 in total

1.  Single molecule optical measurements of orientation and rotations of biological macromolecules.

Authors:  Deborah Y Shroder; Lisa G Lippert; Yale E Goldman
Journal:  Methods Appl Fluoresc       Date:  2016-11-22       Impact factor: 3.009

2.  Determining the rotational mobility of a single molecule from a single image: a numerical study.

Authors:  Adam S Backer; W E Moerner
Journal:  Opt Express       Date:  2015-02-23       Impact factor: 3.894

Review 3.  The role of molecular dipole orientation in single-molecule fluorescence microscopy and implications for super-resolution imaging.

Authors:  Mikael P Backlund; Matthew D Lew; Adam S Backer; Steffen J Sahl; W E Moerner
Journal:  Chemphyschem       Date:  2013-12-30       Impact factor: 3.102

Review 4.  Quantitative analysis of single-molecule superresolution images.

Authors:  Carla Coltharp; Xinxing Yang; Jie Xiao
Journal:  Curr Opin Struct Biol       Date:  2014-08-30       Impact factor: 6.809

Review 5.  Cryogenic superresolution correlative light and electron microscopy on the frontier of subcellular imaging.

Authors:  Buyun Tian; Xiaojun Xu; Yanhong Xue; Wei Ji; Tao Xu
Journal:  Biophys Rev       Date:  2021-11-26

6.  Extending single-molecule microscopy using optical Fourier processing.

Authors:  Adam S Backer; W E Moerner
Journal:  J Phys Chem B       Date:  2014-05-12       Impact factor: 2.991

  6 in total

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