Literature DB >> 22431610

Fluorescence microscopy for simultaneous observation of 3D orientation and movement and its application to quantum rod-tagged myosin V.

Masashi Ohmachi1, Yasunori Komori, Atsuko H Iwane, Fumihiko Fujii, Takashi Jin, Toshio Yanagida.   

Abstract

Single molecule fluorescence polarization techniques have been used for three-dimensional (3D) orientation measurements to observe the dynamic properties of single molecules. However, only few techniques can simultaneously measure 3D orientation and position. Furthermore, these techniques often require complex equipment and cumbersome analysis. We have developed a microscopy system and synthesized highly fluorescent, rod-like shaped quantum dots (Q rods), which have linear polarizations, to simultaneously measure the position and 3D orientation of a single fluorescent probe. The optics splits the fluorescence from the probe into four different spots depending on the polarization angle and projects them onto a CCD camera. These spots are used to determine the 2D position and 3D orientation. Q rod orientations could be determined with better than 10° accuracy at 33 ms time resolution. We applied our microscopy and Q rods to simultaneously measure myosin V movement along an actin filament and rotation around its own axis, finding that myosin V rotates 90° for each step. From this result, we suggest that in the two-headed bound state, myosin V necks are perpendicular to one another, while in the one-headed bound state the detached trailing myosin V head is biased forward in part by rotating its lever arm about its own axis. This microscopy system should be applicable to a wide range of dynamic biological processes that depend on single molecule orientation dynamics.

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Year:  2012        PMID: 22431610      PMCID: PMC3325717          DOI: 10.1073/pnas.1118472109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  Video imaging of walking myosin V by high-speed atomic force microscopy.

Authors:  Noriyuki Kodera; Daisuke Yamamoto; Ryoki Ishikawa; Toshio Ando
Journal:  Nature       Date:  2010-10-10       Impact factor: 49.962

2.  Adaptability of myosin V studied by simultaneous detection of position and orientation.

Authors:  Sheyum Syed; Gregory E Snyder; Clara Franzini-Armstrong; Paul R Selvin; Yale E Goldman
Journal:  EMBO J       Date:  2006-04-06       Impact factor: 11.598

3.  Myosin V walks by lever action and Brownian motion.

Authors:  Katsuyuki Shiroguchi; Kazuhiko Kinosita
Journal:  Science       Date:  2007-05-25       Impact factor: 47.728

4.  Single molecules observed by near-field scanning optical microscopy.

Authors:  E Betzig; R J Chichester
Journal:  Science       Date:  1993-11-26       Impact factor: 47.728

5.  Right-handed rotation of an actin filament in an in vitro motile system.

Authors:  T Nishizaka; T Yagi; Y Tanaka; S Ishiwata
Journal:  Nature       Date:  1993-01-21       Impact factor: 49.962

6.  Linearly polarized emission from colloidal semiconductor quantum rods.

Authors:  J Hu; W Yang; L Manna; A P Alivisatos
Journal:  Science       Date:  2001-05-03       Impact factor: 47.728

7.  Myosin-V makes two brownian 90 degrees rotations per 36-nm step.

Authors:  Yasunori Komori; Atsuko H Iwane; Toshio Yanagida
Journal:  Nat Struct Mol Biol       Date:  2007-09-23       Impact factor: 15.369

8.  Three-dimensional structure of myosin subfragment-1: a molecular motor.

Authors:  I Rayment; W R Rypniewski; K Schmidt-Bäse; R Smith; D R Tomchick; M M Benning; D A Winkelmann; G Wesenberg; H M Holden
Journal:  Science       Date:  1993-07-02       Impact factor: 47.728

9.  CdSe/CdS/ZnS double shell nanorods with high photoluminescence efficiency and their exploitation as biolabeling probes.

Authors:  Sasanka Deka; Alessandra Quarta; Maria Grazia Lupo; Andrea Falqui; Simona Boninelli; Cinzia Giannini; Giovanni Morello; Milena De Giorgi; Guglielmo Lanzani; Corrado Spinella; Roberto Cingolani; Teresa Pellegrino; Liberato Manna
Journal:  J Am Chem Soc       Date:  2009-03-04       Impact factor: 15.419

10.  Direct observation of the myosin Va recovery stroke that contributes to unidirectional stepping along actin.

Authors:  Katsuyuki Shiroguchi; Harvey F Chin; Diane E Hannemann; Eiro Muneyuki; Enrique M De La Cruz; Kazuhiko Kinosita
Journal:  PLoS Biol       Date:  2011-04-12       Impact factor: 8.029

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  26 in total

1.  Quantitative nanoscale imaging of orientational order in biological filaments by polarized superresolution microscopy.

Authors:  Cesar Augusto Valades Cruz; Haitham Ahmed Shaban; Alla Kress; Nicolas Bertaux; Serge Monneret; Manos Mavrakis; Julien Savatier; Sophie Brasselet
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-01       Impact factor: 11.205

Review 2.  Seeing the unseen: Imaging rotation in cells with designer anisotropic particles.

Authors:  Yuan Gao; Yanqi Yu; Lucero Sanchez; Yan Yu
Journal:  Micron       Date:  2017-07-08       Impact factor: 2.251

3.  Ultrafast, accurate, and robust localization of anisotropic dipoles.

Authors:  Yongdeng Zhang; Lusheng Gu; Hao Chang; Wei Ji; Yan Chen; Mingshu Zhang; Lu Yang; Bei Liu; Liangyi Chen; Tao Xu
Journal:  Protein Cell       Date:  2013-06-07       Impact factor: 14.870

4.  Four-dimensional spatial nanometry of single particles in living cells using polarized quantum rods.

Authors:  Tomonobu M Watanabe; Fumihiko Fujii; Takashi Jin; Eiji Umemoto; Masayuki Miyasaka; Hideaki Fujita; Toshio Yanagida
Journal:  Biophys J       Date:  2013-08-06       Impact factor: 4.033

5.  Single molecule optical measurements of orientation and rotations of biological macromolecules.

Authors:  Deborah Y Shroder; Lisa G Lippert; Yale E Goldman
Journal:  Methods Appl Fluoresc       Date:  2016-11-22       Impact factor: 3.009

6.  The More Exotic Shapes of Semiconductor Nanocrystals: Emerging Applications in Bioimaging.

Authors:  Sung Jun Lim; Andrew Smith; Shuming Nie
Journal:  Curr Opin Chem Eng       Date:  2014-05-01       Impact factor: 5.163

7.  Semiconductor Nanocrystals for Biological Imaging and Fluorescence Spectroscopy.

Authors:  Fumihiko Fujii
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

8.  Angular measurements of the dynein ring reveal a stepping mechanism dependent on a flexible stalk.

Authors:  Lisa G Lippert; Tali Dadosh; Jodi A Hadden; Vishakha Karnawat; Benjamin T Diroll; Christopher B Murray; Erika L F Holzbaur; Klaus Schulten; Samara L Reck-Peterson; Yale E Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-22       Impact factor: 11.205

Review 9.  Detection, counting, and imaging of single nanoparticles.

Authors:  Wei Wang; Nongjian Tao
Journal:  Anal Chem       Date:  2013-12-12       Impact factor: 6.986

10.  Single Molecule 3D Orientation in Time and Space: A 6D Dynamic Study on Fluorescently Labeled Lipid Membranes.

Authors:  Richard Börner; Nicky Ehrlich; Johannes Hohlbein; Christian G Hübner
Journal:  J Fluoresc       Date:  2016-03-14       Impact factor: 2.217

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