Literature DB >> 25836463

Determining the rotational mobility of a single molecule from a single image: a numerical study.

Adam S Backer, W E Moerner.   

Abstract

Measurements of the orientational freedom with which a single molecule may rotate or 'wobble' about a fixed axis have provided researchers invaluable clues about the underlying behavior of a variety of biological systems. In this paper, we propose a measurement and data analysis procedure based on a widefield fluorescence microscope image for quantitatively distinguishing individual molecules that exhibit varying degrees of rotational mobility. Our proposed technique is especially applicable to cases in which the molecule undergoes rotational motions on a timescale much faster than the framerate of the camera used to record fluorescence images. Unlike currently available methods, sophisticated hardware for modulating the polarization of light illuminating the sample is not required. Additional polarization optics may be inserted in the microscope's imaging pathway to achieve superior measurement precision, but are not essential. We present a theoretical analysis, and benchmark our technique with numerical simulations using typical experimental parameters for single-molecule imaging.

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Year:  2015        PMID: 25836463      PMCID: PMC4394761          DOI: 10.1364/OE.23.004255

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  34 in total

Review 1.  Fluorescence polarization microscopy.

Authors:  D Axelrod
Journal:  Methods Cell Biol       Date:  1989       Impact factor: 1.441

2.  Measurement of single macromolecule orientation by total internal reflection fluorescence polarization microscopy.

Authors:  Joseph N Forkey; Margot E Quinlan; Yale E Goldman
Journal:  Biophys J       Date:  2005-05-13       Impact factor: 4.033

Review 3.  Rotational motions of macro-molecules by single-molecule fluorescence microscopy.

Authors:  Stephanie A Rosenberg; Margot E Quinlan; Joseph N Forkey; Yale E Goldman
Journal:  Acc Chem Res       Date:  2005-07       Impact factor: 22.384

4.  A theory of fluorescence polarization decay in membranes.

Authors:  K Kinosita; S Kawato; A Ikegami
Journal:  Biophys J       Date:  1977-12       Impact factor: 4.033

5.  A surface-bound molecule that undergoes optically biased Brownian rotation.

Authors:  James A Hutchison; Hiroshi Uji-i; Ania Deres; Tom Vosch; Susana Rocha; Sibylle Müller; Andreas A Bastian; Jörg Enderlein; Hassan Nourouzi; Chen Li; Andreas Herrmann; Klaus Müllen; Frans De Schryver; Johan Hofkens
Journal:  Nat Nanotechnol       Date:  2014-01-19       Impact factor: 39.213

6.  A bisected pupil for studying single-molecule orientational dynamics and its application to three-dimensional super-resolution microscopy.

Authors:  Adam S Backer; Mikael P Backlund; Alexander R von Diezmann; Steffen J Sahl; W E Moerner
Journal:  Appl Phys Lett       Date:  2014-05-12       Impact factor: 3.791

7.  Orientation of the myosin light chain region by single molecule total internal reflection fluorescence polarization microscopy.

Authors:  Margot E Quinlan; Joseph N Forkey; Yale E Goldman
Journal:  Biophys J       Date:  2005-05-13       Impact factor: 4.033

8.  Tilting and wobble of myosin V by high-speed single-molecule polarized fluorescence microscopy.

Authors:  John F Beausang; Deborah Y Shroder; Philip C Nelson; Yale E Goldman
Journal:  Biophys J       Date:  2013-03-19       Impact factor: 4.033

9.  Single-molecule orientation measurements with a quadrated pupil.

Authors:  Adam S Backer; Mikael P Backlund; Matthew D Lew; W E Moerner
Journal:  Opt Lett       Date:  2013-05-01       Impact factor: 3.776

10.  Video-rate nanoscopy using sCMOS camera-specific single-molecule localization algorithms.

Authors:  Fang Huang; Tobias M P Hartwich; Felix E Rivera-Molina; Yu Lin; Whitney C Duim; Jane J Long; Pradeep D Uchil; Jordan R Myers; Michelle A Baird; Walther Mothes; Michael W Davidson; Derek Toomre; Joerg Bewersdorf
Journal:  Nat Methods       Date:  2013-05-26       Impact factor: 28.547

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  13 in total

1.  Quantitative nanoscale imaging of orientational order in biological filaments by polarized superresolution microscopy.

Authors:  Cesar Augusto Valades Cruz; Haitham Ahmed Shaban; Alla Kress; Nicolas Bertaux; Serge Monneret; Manos Mavrakis; Julien Savatier; Sophie Brasselet
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-01       Impact factor: 11.205

Review 2.  Three-Dimensional Localization of Single Molecules for Super-Resolution Imaging and Single-Particle Tracking.

Authors:  Lexy von Diezmann; Yoav Shechtman; W E Moerner
Journal:  Chem Rev       Date:  2017-02-02       Impact factor: 60.622

3.  Imaging the three-dimensional orientation and rotational mobility of fluorescent emitters using the Tri-spot point spread function.

Authors:  Oumeng Zhang; Jin Lu; Tianben Ding; Matthew D Lew
Journal:  Appl Phys Lett       Date:  2018-07-17       Impact factor: 3.791

4.  Variable incidence angle linear dichroism (VALiD): a technique for unique 3D orientation measurement of fluorescent ensembles.

Authors:  Aaron T Blanchard; Joshua M Brockman; Khalid Salaita; Alexa L Mattheyses
Journal:  Opt Express       Date:  2020-03-30       Impact factor: 3.894

5.  Spatio-angular fluorescence microscopy III. Constrained angular diffusion, polarized excitation, and high-NA imaging.

Authors:  Talon Chandler; Hari Shroff; Rudolf Oldenbourg; Patrick La Rivière
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2020-09-01       Impact factor: 2.129

6.  Enhanced DNA imaging using super-resolution microscopy and simultaneous single-molecule orientation measurements.

Authors:  Adam S Backer; Maurice Y Lee; W E Moerner
Journal:  Optica       Date:  2016-06-17       Impact factor: 11.104

7.  Single-Molecule Localization Microscopy of 3D Orientation and Anisotropic Wobble Using a Polarized Vortex Point Spread Function.

Authors:  Tianben Ding; Matthew D Lew
Journal:  J Phys Chem B       Date:  2021-11-12       Impact factor: 2.991

8.  Dipole-spread-function engineering for simultaneously measuring the 3D orientations and 3D positions of fluorescent molecules.

Authors:  Tingting Wu; Jin Lu; Matthew D Lew
Journal:  Optica       Date:  2022-05-03       Impact factor: 10.644

9.  Spatio-angular fluorescence microscopy I. Basic theory.

Authors:  Talon Chandler; Hari Shroff; Rudolf Oldenbourg; Patrick La Rivière
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2019-08-01       Impact factor: 2.129

10.  Graphene- and metal-induced energy transfer for single-molecule imaging and live-cell nanoscopy with (sub)-nanometer axial resolution.

Authors:  Arindam Ghosh; Alexey I Chizhik; Narain Karedla; Jörg Enderlein
Journal:  Nat Protoc       Date:  2021-06-07       Impact factor: 13.491

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