Literature DB >> 23735670

Toggle switch: noise determines the winning gene.

Joanna Jaruszewicz1, Tomasz Lipniacki.   

Abstract

Bistable regulatory elements enhance heterogeneity in cell populations and, in multicellular organisms, allow cells to specialize and specify their fate. Our study demonstrates that in a system of bistable genetic switch, the noise characteristics control in which of the two epigenetic attractors the cell population will settle. We focus on two types of noise: the gene switching noise and protein dimerization noise. We found that the change of magnitudes of these noise components for one of the two competing genes introduces a large asymmetry of the protein stationary probability distribution and changes the relative probability of individual gene activation. Interestingly, an increase of noise associated with a given gene can either promote or suppress the activation of the gene, depending on the type of noise. Namely, each gene is repressed by an increase of its gene switching noise and activated by an increase of its protein-product dimerization noise. The observed effect was found robust to the large, up to fivefold deviations of the model parameters. In summary, we demonstrated that noise itself may determine the relative strength of the epigenetic attractors, which may provide a unique mode of control of cell fate decisions.

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Year:  2013        PMID: 23735670      PMCID: PMC3824086          DOI: 10.1088/1478-3975/10/3/035007

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  45 in total

1.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

2.  Stability puzzles in phage lambda.

Authors:  Erik Aurell; Stanley Brown; Johan Johanson; Kim Sneppen
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-05-16

3.  Phenotypic diversity, population growth, and information in fluctuating environments.

Authors:  Edo Kussell; Stanislas Leibler
Journal:  Science       Date:  2005-08-25       Impact factor: 47.728

4.  Genetic toggle switch without cooperative binding.

Authors:  Azi Lipshtat; Adiel Loinger; Nathalie Q Balaban; Ofer Biham
Journal:  Phys Rev Lett       Date:  2006-05-08       Impact factor: 9.161

5.  Dynamics and evolution of stochastic bistable gene networks with sensing in fluctuating environments.

Authors:  Andre S Ribeiro
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-12-02

Review 6.  Tweaking biological switches through a better understanding of bistability behavior.

Authors:  Anushree Chatterjee; Yiannis N Kaznessis; Wei-Shou Hu
Journal:  Curr Opin Biotechnol       Date:  2008-10-01       Impact factor: 9.740

7.  Predicting kinetic constants of protein-protein interactions based on structural properties.

Authors:  Hongjun Bai; Kun Yang; Daqi Yu; Changsheng Zhang; Fangjin Chen; Luhua Lai
Journal:  Proteins       Date:  2010-12-06

8.  Bistability in the JNK cascade.

Authors:  C P Bagowski; J E Ferrell
Journal:  Curr Biol       Date:  2001-08-07       Impact factor: 10.834

9.  Bistability and switching in the lysis/lysogeny genetic regulatory network of bacteriophage lambda.

Authors:  Tianhai Tian; Kevin Burrage
Journal:  J Theor Biol       Date:  2004-03-21       Impact factor: 2.691

10.  Asymmetric stochastic switching driven by intrinsic molecular noise.

Authors:  David Frigola; Laura Casanellas; José M Sancho; Marta Ibañes
Journal:  PLoS One       Date:  2012-02-21       Impact factor: 3.240

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  6 in total

1.  Pattern selection by dynamical biochemical signals.

Authors:  David Palau-Ortin; Pau Formosa-Jordan; José M Sancho; Marta Ibañes
Journal:  Biophys J       Date:  2015-03-24       Impact factor: 4.033

2.  Multi-stability in cellular differentiation enabled by a network of three mutually repressing master regulators.

Authors:  Atchuta Srinivas Duddu; Sarthak Sahoo; Souvadra Hati; Siddharth Jhunjhunwala; Mohit Kumar Jolly
Journal:  J R Soc Interface       Date:  2020-09-30       Impact factor: 4.118

3.  The Switch in a Genetic Toggle System with Lévy Noise.

Authors:  Yong Xu; Yongge Li; Hao Zhang; Xiaofan Li; Jürgen Kurths
Journal:  Sci Rep       Date:  2016-08-19       Impact factor: 4.379

4.  Computing with biological switches and clocks.

Authors:  Neil Dalchau; Gregory Szép; Rosa Hernansaiz-Ballesteros; Chris P Barnes; Luca Cardelli; Andrew Phillips; Attila Csikász-Nagy
Journal:  Nat Comput       Date:  2018-06-01       Impact factor: 1.690

5.  Bursting noise in gene expression dynamics: linking microscopic and mesoscopic models.

Authors:  Yen Ting Lin; Tobias Galla
Journal:  J R Soc Interface       Date:  2016-01       Impact factor: 4.118

6.  Stability and Robustness of Unbalanced Genetic Toggle Switches in the Presence of Scarce Resources.

Authors:  Chentao Yong; Andras Gyorgy
Journal:  Life (Basel)       Date:  2021-03-24
  6 in total

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