Literature DB >> 19256863

Dynamics and evolution of stochastic bistable gene networks with sensing in fluctuating environments.

Andre S Ribeiro1.   

Abstract

We study how cells can optimize fitness in variable environments by tuning the internal fluctuations of protein expression of a bistable genetic switch. We model cells as bistable toggle switches whose dynamics are governed by a delayed stochastic simulation algorithm. Each state of the toggle switch makes the cell more fit in one of two environmental conditions. Different noise levels in protein expression yield different fitness values for cells in an environment that randomly switches between the two conditions. We compare the behavior of two cell types, one that can sense the environmental condition and one that cannot. In fast changing environments both cell types evolve to be as noisy as possible while maintaining bistability of the toggle switch. In slowly changing environments, evolved nonsensing cells are less noisy while sensing cells evolve the same noise level as in fast changing environments. Sensing removes the need of genotypic changes to adapt to changes in the environment fluctuation rate, providing an evolutionary advantage in unpredictable environments.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 19256863     DOI: 10.1103/PhysRevE.78.061902

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  7 in total

1.  Switching and growth for microbial populations in catastrophic responsive environments.

Authors:  Paolo Visco; Rosalind J Allen; Satya N Majumdar; Martin R Evans
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

2.  Effects of transcriptional pausing on gene expression dynamics.

Authors:  Tiina Rajala; Antti Häkkinen; Shannon Healy; Olli Yli-Harja; Andre S Ribeiro
Journal:  PLoS Comput Biol       Date:  2010-03-12       Impact factor: 4.475

3.  Toggle switch: noise determines the winning gene.

Authors:  Joanna Jaruszewicz; Tomasz Lipniacki
Journal:  Phys Biol       Date:  2013-06-04       Impact factor: 2.583

Review 4.  Bacterial growth: a statistical physicist's guide.

Authors:  Rosalind J Allen; Bartlomiej Waclaw
Journal:  Rep Prog Phys       Date:  2018-10-01

5.  Bistability in feedback circuits as a byproduct of evolution of evolvability.

Authors:  Hiroyuki Kuwahara; Orkun S Soyer
Journal:  Mol Syst Biol       Date:  2012-01-17       Impact factor: 11.429

6.  The evolutionary emergence of stochastic phenotype switching in bacteria.

Authors:  Paul B Rainey; Hubertus J E Beaumont; Gayle C Ferguson; Jenna Gallie; Christian Kost; Eric Libby; Xue-Xian Zhang
Journal:  Microb Cell Fact       Date:  2011-08-30       Impact factor: 5.328

7.  Epigenetic switching as a strategy for quick adaptation while attenuating biochemical noise.

Authors:  Mariana Gómez-Schiavon; Nicolas E Buchler
Journal:  PLoS Comput Biol       Date:  2019-10-28       Impact factor: 4.475

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.