Literature DB >> 14990387

Bistability and switching in the lysis/lysogeny genetic regulatory network of bacteriophage lambda.

Tianhai Tian1, Kevin Burrage.   

Abstract

Bistability and switching are two important aspects of the genetic regulatory network of lambda phage. Positive and negative feedbacks are key regulatory mechanisms in this network. By the introduction of threshold values, the developmental pathway of lambda phage is divided into different stages. If the protein level reaches a threshold value, positive or negative feedback will be effective and regulate the process of development. Using this regulatory mechanism, we present a quantitative model to realize bistability and switching of lambda phage based on experimental data. This model gives descriptions of decisive mechanisms for different pathways in induction. A stochastic model is also introduced for describing statistical properties of switching in induction. A stochastic degradation rate is used to represent intrinsic noise in induction for switching the system from the lysogenic pathway to the lysis pathway. The approach in this paper represents an attempt to describe the regulatory mechanism in genetic regulatory network under the influence of intrinsic noise in the framework of continuous models.

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Year:  2004        PMID: 14990387     DOI: 10.1016/j.jtbi.2003.11.003

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  22 in total

1.  Bistability explains threshold phenomena in protein aggregation both in vitro and in vivo.

Authors:  Theodore R Rieger; Richard I Morimoto; Vassily Hatzimanikatis
Journal:  Biophys J       Date:  2005-11-18       Impact factor: 4.033

2.  Stochastic models for regulatory networks of the genetic toggle switch.

Authors:  Tianhai Tian; Kevin Burrage
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-19       Impact factor: 11.205

3.  DNA looping provides stability and robustness to the bacteriophage lambda switch.

Authors:  Marco J Morelli; Pieter Rein Ten Wolde; Rosalind J Allen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-01       Impact factor: 11.205

4.  Collective decision making in bacterial viruses.

Authors:  Joshua S Weitz; Yuriy Mileyko; Richard I Joh; Eberhard O Voit
Journal:  Biophys J       Date:  2008-06-20       Impact factor: 4.033

5.  Mathematical modelling of stem cell differentiation: the PU.1-GATA-1 interaction.

Authors:  Campbell Duff; Kate Smith-Miles; Leo Lopes; Tianhai Tian
Journal:  J Math Biol       Date:  2011-04-02       Impact factor: 2.259

6.  Convergent transcription confers a bistable switch in Enterococcus faecalis conjugation.

Authors:  Anushree Chatterjee; Christopher M Johnson; Che-Chi Shu; Yiannis N Kaznessis; Doraiswami Ramkrishna; Gary M Dunny; Wei-Shou Hu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

7.  The pseudo-compartment method for coupling partial differential equation and compartment-based models of diffusion.

Authors:  Christian A Yates; Mark B Flegg
Journal:  J R Soc Interface       Date:  2015-05-06       Impact factor: 4.118

Review 8.  Qualitatively distinct phenotypes in the design space of biochemical systems.

Authors:  Michael A Savageau; Rick A Fasani
Journal:  FEBS Lett       Date:  2009-12-17       Impact factor: 4.124

9.  Monomeric bistability and the role of autoloops in gene regulation.

Authors:  Stefanie Widder; Javier Macía; Ricard Solé
Journal:  PLoS One       Date:  2009-04-30       Impact factor: 3.240

10.  Hybrid stochastic simplifications for multiscale gene networks.

Authors:  Alina Crudu; Arnaud Debussche; Ovidiu Radulescu
Journal:  BMC Syst Biol       Date:  2009-09-07
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