Literature DB >> 23721747

Advances in NMR structures of integral membrane proteins.

Innokentiy Maslennikov1, Senyon Choe.   

Abstract

Integral membrane proteins (IMPs) play a central role in cell communication with the environment. Their structures are essential for our understanding of the molecular mechanisms of signaling and for drug design, yet they remain badly underrepresented in the protein structure databank. Solution NMR is, aside from X-ray crystallography, the major tool in structural biology. Here we review recently reported solution NMR structures of polytopic IMPs and discuss the new approaches, which were developed in the course of these studies to overcome barriers in the field. Advances in cell-free protein expression, combinatorial isotope labeling, resonance assignment, and collection of structural data greatly accelerated IMP structure determination by solution NMR. In addition, novel membrane-mimicking media made possible determination of solution NMR structures of IMPs in a native-like lipid environment.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23721747      PMCID: PMC3737378          DOI: 10.1016/j.sbi.2013.05.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  65 in total

1.  One-step amino acid selective isotope labeling of proteins in prototrophic Escherichia coli strains.

Authors:  Christopher O'Grady; Benjamin L Rempel; Akosiererem Sokaribo; Sergiy Nokhrin; Oleg Y Dmitriev
Journal:  Anal Biochem       Date:  2012-04-23       Impact factor: 3.365

2.  In situ 19F NMR studies of an E. coli membrane protein.

Authors:  Pan Shi; Dong Li; Hongwei Chen; Ying Xiong; Yusong Wang; Changlin Tian
Journal:  Protein Sci       Date:  2012-02-23       Impact factor: 6.725

3.  Membrane-protein structure determination by solid-state NMR spectroscopy of microcrystals.

Authors:  Shakeel Ahmad Shahid; Benjamin Bardiaux; W Trent Franks; Ludwig Krabben; Michael Habeck; Barth-Jan van Rossum; Dirk Linke
Journal:  Nat Methods       Date:  2012-11-11       Impact factor: 28.547

4.  Structural basis for the interaction of lipopolysaccharide with outer membrane protein H (OprH) from Pseudomonas aeruginosa.

Authors:  Thomas C Edrington; Erica Kintz; Joanna B Goldberg; Lukas K Tamm
Journal:  J Biol Chem       Date:  2011-08-24       Impact factor: 5.157

5.  Optimization of amino acid type-specific 13C and 15N labeling for the backbone assignment of membrane proteins by solution- and solid-state NMR with the UPLABEL algorithm.

Authors:  Frederik Hefke; Anurag Bagaria; Sina Reckel; Sandra Johanna Ullrich; Volker Dötsch; Clemens Glaubitz; Peter Güntert
Journal:  J Biomol NMR       Date:  2010-12-18       Impact factor: 2.835

6.  Structural origins of nitroxide side chain dynamics on membrane protein α-helical sites.

Authors:  Brett M Kroncke; Peter S Horanyi; Linda Columbus
Journal:  Biochemistry       Date:  2010-11-08       Impact factor: 3.162

7.  Site-specific ¹⁹F NMR chemical shift and side chain relaxation analysis of a membrane protein labeled with an unnatural amino acid.

Authors:  Pan Shi; Hu Wang; Zhaoyong Xi; Chaowei Shi; Ying Xiong; Changlin Tian
Journal:  Protein Sci       Date:  2011-01       Impact factor: 6.725

8.  Mitochondrial uncoupling protein 2 structure determined by NMR molecular fragment searching.

Authors:  Marcelo J Berardi; William M Shih; Stephen C Harrison; James J Chou
Journal:  Nature       Date:  2011-07-24       Impact factor: 49.962

Review 9.  Nanobody stabilization of G protein-coupled receptor conformational states.

Authors:  Jan Steyaert; Brian K Kobilka
Journal:  Curr Opin Struct Biol       Date:  2011-07-21       Impact factor: 6.809

Review 10.  Tuning microbial hosts for membrane protein production.

Authors:  Maria Freigassner; Harald Pichler; Anton Glieder
Journal:  Microb Cell Fact       Date:  2009-12-29       Impact factor: 5.328

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  13 in total

1.  Single-particle electron microscopy in the study of membrane protein structure.

Authors:  Rita De Zorzi; Wei Mi; Maofu Liao; Thomas Walz
Journal:  Microscopy (Oxf)       Date:  2015-10-15       Impact factor: 1.571

2.  Stable isotope labeling strategy based on coding theory.

Authors:  Takuma Kasai; Seizo Koshiba; Jun Yokoyama; Takanori Kigawa
Journal:  J Biomol NMR       Date:  2015-08-21       Impact factor: 2.835

Review 3.  Membrane proteins in their native habitat as seen by solid-state NMR spectroscopy.

Authors:  Leonid S Brown; Vladimir Ladizhansky
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

4.  NMR assignments of sparsely labeled proteins using a genetic algorithm.

Authors:  Qi Gao; Gordon R Chalmers; Kelley W Moremen; James H Prestegard
Journal:  J Biomol NMR       Date:  2017-03-13       Impact factor: 2.835

5.  Oncogenic and RASopathy-associated K-RAS mutations relieve membrane-dependent occlusion of the effector-binding site.

Authors:  Mohammad T Mazhab-Jafari; Christopher B Marshall; Matthew J Smith; Geneviève M C Gasmi-Seabrook; Peter B Stathopulos; Fuyuhiko Inagaki; Lewis E Kay; Benjamin G Neel; Mitsuhiko Ikura
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-04       Impact factor: 11.205

Review 6.  Applications of NMR to membrane proteins.

Authors:  Stanley J Opella; Francesca M Marassi
Journal:  Arch Biochem Biophys       Date:  2017-05-18       Impact factor: 4.013

7.  Time-shared experiments for efficient assignment of triple-selectively labeled proteins.

Authors:  Frank Löhr; Aisha Laguerre; Christoph Bock; Sina Reckel; Peter J Connolly; Norzehan Abdul-Manan; Franz Tumulka; Rupert Abele; Jonathan M Moore; Volker Dötsch
Journal:  J Magn Reson       Date:  2014-09-30       Impact factor: 2.229

8.  High resolution solid-state NMR spectroscopy of the Yersinia pestis outer membrane protein Ail in lipid membranes.

Authors:  Yong Yao; Samit Kumar Dutta; Sang Ho Park; Ratan Rai; L Miya Fujimoto; Andrey A Bobkov; Stanley J Opella; Francesca M Marassi
Journal:  J Biomol NMR       Date:  2017-02-26       Impact factor: 2.835

9.  Drug screening strategy for human membrane proteins: from NMR protein backbone structure to in silica- and NMR-screened hits.

Authors:  Steffen Lindert; Innokentiy Maslennikov; Ellis J C Chiu; Levi C Pierce; J Andrew McCammon; Senyon Choe
Journal:  Biochem Biophys Res Commun       Date:  2014-02-10       Impact factor: 3.575

10.  An extended combinatorial 15N, 13Cα, and 13C' labeling approach to protein backbone resonance assignment.

Authors:  Frank Löhr; Franz Tumulka; Christoph Bock; Rupert Abele; Volker Dötsch
Journal:  J Biomol NMR       Date:  2015-05-08       Impact factor: 2.835

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