Literature DB >> 20392104

Effect of heme modification on oxygen affinity of myoglobin and equilibrium of the acid-alkaline transition in metmyoglobin.

Tomokazu Shibata1, Satoshi Nagao, Masashi Fukaya, Hulin Tai, Shigenori Nagatomo, Kenji Morihashi, Takashi Matsuo, Shun Hirota, Akihiro Suzuki, Kiyohiro Imai, Yasuhiko Yamamoto.   

Abstract

Functional regulation of myoglobin (Mb) is thought to be achieved through the heme environment furnished by nearby amino acid residues, and subtle tuning of the intrinsic heme Fe reactivity. We have performed substitution of strongly electron-withdrawing perfluoromethyl (CF(3)) group(s) as heme side chain(s) of Mb to obtain large alterations of the heme electronic structure in order to elucidate the relationship between the O(2) affinity of Mb and the electronic properties of heme peripheral side chains. We have utilized the equilibrium constant (pK(a)) of the "acid-alkaline transition" in metmyoglobin in order to quantitatively assess the effects of the CF(3) substitutions for the electron density of heme Fe atom (rho(Fe)) of the protein. The pK(a) value of the protein was found to decrease by approximately 1 pH unit upon the introduction of one CF(3) group, and the decrease in the pK(a) value with decreasing the rho(Fe) value was confirmed by density functional theory calculations on some model compounds. The O(2) affinity of Mb was found to correlate well with the pK(a) value in such a manner that the P(50) value, which is the partial pressure of O(2) required to achieve 50% oxygenation, increases by a factor of 2.7 with a decrease of 1 pK(a) unit. Kinetic studies on the proteins revealed that the decrease in O(2) affinity upon the introduction of an electron-withdrawing CF(3) group is due to an increase in the O(2) dissociation rate. Since the introduction of a CF(3) group substitution is thought to prevent further Fe(2+)-O(2) bond polarization and hence formation of a putative Fe(3+)-O(2)(-)-like species of the oxy form of the protein [Maxwell, J. C.; Volpe, J. A.; Barlow, C. H.; Caughey, W. S. Biochem. Biophys. Res. Commun. 1974, 58, 166-171], the O(2) dissociation is expected to be enhanced by the substitution of electron-withdrawing groups as heme side chains. We also found that, in sharp contrast to the case of the O(2) binding to the protein, the CO association and dissociation rates are essentially independent of the rho(Fe) value. As a result, the introduction of electron-withdrawing group(s) enhances the preferential binding of CO to the protein over that of O(2). These findings not only resolve the long-standing issue of the mechanism underlying the subtle tuning of the intrinsic heme Fe reactivity, but also provide new insights into the structure-function relationship of the protein.

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Year:  2010        PMID: 20392104     DOI: 10.1021/ja909891q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  7 in total

1.  Replacement of the Distal Histidine Reveals a Noncanonical Heme Binding Site in a 2-on-2 Hemoglobin.

Authors:  Dillon B Nye; Juliette T J Lecomte
Journal:  Biochemistry       Date:  2018-09-28       Impact factor: 3.162

2.  Strategies for the expression and characterization of artificial myoglobin-based carbene transferases.

Authors:  Daniela M Carminati; Eric J Moore; Rudi Fasan
Journal:  Methods Enzymol       Date:  2020-08-06       Impact factor: 1.600

3.  Structural characterization of a carbon monoxide adduct of a heme-DNA complex.

Authors:  Kaori Saito; Hulin Tai; Masashi Fukaya; Tomokazu Shibata; Ryu Nishimura; Saburo Neya; Yasuhiko Yamamoto
Journal:  J Biol Inorg Chem       Date:  2011-12-28       Impact factor: 3.358

4.  Stereoselective olefin cyclopropanation under aerobic conditions with an artificial enzyme incorporating an iron-chlorin e6 cofactor.

Authors:  Gopeekrishnan Sreenilayam; Eric J Moore; Viktoria Steck; Rudi Fasan
Journal:  ACS Catal       Date:  2017-10-09       Impact factor: 13.084

5.  Insights Into How Heme Reduction Potentials Modulate Enzymatic Activities of a Myoglobin-based Functional Oxidase.

Authors:  Ambika Bhagi-Damodaran; Maximilian Kahle; Yelu Shi; Yong Zhang; Pia Ädelroth; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2017-05-04       Impact factor: 15.336

6.  Myoglobin as a versatile peroxidase: Implications for a more important role for vertebrate striated muscle in antioxidant defense.

Authors:  Mark H Mannino; Rishi S Patel; Amanda M Eccardt; Rodrigo A Perez Magnelli; Chiron L C Robinson; Blythe E Janowiak; Daniel E Warren; Jonathan S Fisher
Journal:  Comp Biochem Physiol B Biochem Mol Biol       Date:  2019-04-30       Impact factor: 2.231

7.  Intermediate P* from soluble methane monooxygenase contains a diferrous cluster.

Authors:  Rahul Banerjee; Katlyn K Meier; Eckard Münck; John D Lipscomb
Journal:  Biochemistry       Date:  2013-06-13       Impact factor: 3.162

  7 in total

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