Literature DB >> 18633409

Positive feedback of G1 cyclins ensures coherent cell cycle entry.

Jan M Skotheim1, Stefano Di Talia, Eric D Siggia, Frederick R Cross.   

Abstract

In budding yeast, Saccharomyces cerevisiae, the Start checkpoint integrates multiple internal and external signals into an all-or-none decision to enter the cell cycle. Here we show that Start behaves like a switch due to systems-level feedback in the regulatory network. In contrast to current models proposing a linear cascade of Start activation, transcriptional positive feedback of the G1 cyclins Cln1 and Cln2 induces the near-simultaneous expression of the approximately 200-gene G1/S regulon. Nuclear Cln2 drives coherent regulon expression, whereas cytoplasmic Cln2 drives efficient budding. Cells with the CLN1 and CLN2 genes deleted frequently arrest as unbudded cells, incurring a large fluctuation-induced fitness penalty due to both the lack of cytoplasmic Cln2 and insufficient G1/S regulon expression. Thus, positive-feedback-amplified expression of Cln1 and Cln2 simultaneously drives robust budding and rapid, coherent regulon expression. A similar G1/S regulatory network in mammalian cells, comprised of non-orthologous genes, suggests either conservation of regulatory architecture or convergent evolution.

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Year:  2008        PMID: 18633409      PMCID: PMC2606905          DOI: 10.1038/nature07118

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  43 in total

1.  Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF.

Authors:  V R Iyer; C E Horak; C S Scafe; D Botstein; M Snyder; P O Brown
Journal:  Nature       Date:  2001-01-25       Impact factor: 49.962

2.  Serial regulation of transcriptional regulators in the yeast cell cycle.

Authors:  I Simon; J Barnett; N Hannett; C T Harbison; N J Rinaldi; T L Volkert; J J Wyrick; J Zeitlinger; D K Gifford; T S Jaakkola; R A Young
Journal:  Cell       Date:  2001-09-21       Impact factor: 41.582

3.  From fluctuations to phenotypes: the physiology of noise.

Authors:  Michael S Samoilov; Gavin Price; Adam P Arkin
Journal:  Sci STKE       Date:  2006-12-19

4.  The effects of molecular noise and size control on variability in the budding yeast cell cycle.

Authors:  Stefano Di Talia; Jan M Skotheim; James M Bean; Eric D Siggia; Frederick R Cross
Journal:  Nature       Date:  2007-08-23       Impact factor: 49.962

5.  A positive regulator of mitosis, Sok2, functions as a negative regulator of meiosis in Saccharomyces cerevisiae.

Authors:  G Shenhar; Y Kassir
Journal:  Mol Cell Biol       Date:  2001-03       Impact factor: 4.272

6.  Constraining G1-specific transcription to late G1 phase: the MBF-associated corepressor Nrm1 acts via negative feedback.

Authors:  Robertus A M de Bruin; Tatyana I Kalashnikova; Charly Chahwan; W Hayes McDonald; James Wohlschlegel; John Yates; Paul Russell; Curt Wittenberg
Journal:  Mol Cell       Date:  2006-08       Impact factor: 17.970

7.  Distinct subcellular localization patterns contribute to functional specificity of the Cln2 and Cln3 cyclins of Saccharomyces cerevisiae.

Authors:  M E Miller; F R Cross
Journal:  Mol Cell Biol       Date:  2000-01       Impact factor: 4.272

8.  Destabilized green fluorescent protein for monitoring dynamic changes in yeast gene expression with flow cytometry.

Authors:  C Mateus; S V Avery
Journal:  Yeast       Date:  2000-10       Impact factor: 3.239

9.  Dissecting timing variability in yeast meiosis.

Authors:  Iftach Nachman; Aviv Regev; Sharad Ramanathan
Journal:  Cell       Date:  2007-11-02       Impact factor: 41.582

10.  Cdk1 coordinates cell-surface growth with the cell cycle.

Authors:  Derek McCusker; Carilee Denison; Scott Anderson; Thea A Egelhofer; John R Yates; Steven P Gygi; Douglas R Kellogg
Journal:  Nat Cell Biol       Date:  2007-04-08       Impact factor: 28.824

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  197 in total

1.  Antagonistic gene transcripts regulate adaptation to new growth environments.

Authors:  Bridget L Baumgartner; Matthew R Bennett; Michael Ferry; Tracy L Johnson; Lev S Tsimring; Jeff Hasty
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-12       Impact factor: 11.205

Review 2.  Evolution of networks and sequences in eukaryotic cell cycle control.

Authors:  Frederick R Cross; Nicolas E Buchler; Jan M Skotheim
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-12-27       Impact factor: 6.237

3.  Hybrid modeling and simulation of stochastic effects on progression through the eukaryotic cell cycle.

Authors:  Zhen Liu; Yang Pu; Fei Li; Clifford A Shaffer; Stefan Hoops; John J Tyson; Yang Cao
Journal:  J Chem Phys       Date:  2012-01-21       Impact factor: 3.488

4.  Profile of Eric D. Siggia. Interview by Farooq Ahmed.

Authors:  Eric D Siggia
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

5.  Potential and flux landscapes quantify the stability and robustness of budding yeast cell cycle network.

Authors:  Jin Wang; Chunhe Li; Erkang Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-14       Impact factor: 11.205

6.  Stochastic variation: from single cells to superorganisms.

Authors:  Maria L Kilfoil; Paul Lasko; Ehab Abouheif
Journal:  HFSP J       Date:  2009-10-09

7.  Dampened activity of E2F1-DP and Myb-MuvB transcription factors in Drosophila endocycling cells.

Authors:  Shahina B Maqbool; Sonam Mehrotra; Alexis Kolpakas; Chris Durden; Bingqing Zhang; Hua Zhong; Brian R Calvi
Journal:  J Cell Sci       Date:  2010-11-02       Impact factor: 5.285

8.  TATA is a modular component of synthetic promoters.

Authors:  Ilaria Mogno; Francesco Vallania; Robi D Mitra; Barak A Cohen
Journal:  Genome Res       Date:  2010-07-13       Impact factor: 9.043

9.  Controlled chaos: new insights into genetically programmed cell cycle asynchrony.

Authors:  James Umen
Journal:  Cell Cycle       Date:  2010-10-01       Impact factor: 4.534

10.  Compartmentalization of a bistable switch enables memory to cross a feedback-driven transition.

Authors:  Andreas Doncic; Oguzhan Atay; Ervin Valk; Alicia Grande; Alan Bush; Gustavo Vasen; Alejandro Colman-Lerner; Mart Loog; Jan M Skotheim
Journal:  Cell       Date:  2015-03-12       Impact factor: 41.582

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