Literature DB >> 23682203

More IMPATIENT: A Gridding-Accelerated Toeplitz-based Strategy for Non-Cartesian High-Resolution 3D MRI on GPUs.

Jiading Gai1, Nady Obeid, Joseph L Holtrop, Xiao-Long Wu, Fan Lam, Maojing Fu, Justin P Haldar, Wen-Mei W Hwu, Zhi-Pei Liang, Bradley P Sutton.   

Abstract

Several recent methods have been proposed to obtain significant speed-ups in MRI image reconstruction by leveraging the computational power of GPUs. Previously, we implemented a GPU-based image reconstruction technique called the Illinois Massively Parallel Acquisition Toolkit for Image reconstruction with ENhanced Throughput in MRI (IMPATIENT MRI) for reconstructing data collected along arbitrary 3D trajectories. In this paper, we improve IMPATIENT by removing computational bottlenecks by using a gridding approach to accelerate the computation of various data structures needed by the previous routine. Further, we enhance the routine with capabilities for off-resonance correction and multi-sensor parallel imaging reconstruction. Through implementation of optimized gridding into our iterative reconstruction scheme, speed-ups of more than a factor of 200 are provided in the improved GPU implementation compared to the previous accelerated GPU code.

Entities:  

Keywords:  CUDA; GPU; MRI; Toeplitz; gridding; non-Cartesian

Year:  2013        PMID: 23682203      PMCID: PMC3652469          DOI: 10.1016/j.jpdc.2013.01.001

Source DB:  PubMed          Journal:  J Parallel Distrib Comput        ISSN: 0743-7315            Impact factor:   3.734


  23 in total

1.  Fast, iterative image reconstruction for MRI in the presence of field inhomogeneities.

Authors:  Bradley P Sutton; Douglas C Noll; Jeffrey A Fessler
Journal:  IEEE Trans Med Imaging       Date:  2003-02       Impact factor: 10.048

2.  Rapid gridding reconstruction with a minimal oversampling ratio.

Authors:  Philip J Beatty; Dwight G Nishimura; John M Pauly
Journal:  IEEE Trans Med Imaging       Date:  2005-06       Impact factor: 10.048

3.  Selection of a convolution function for Fourier inversion using gridding [computerised tomography application].

Authors:  J I Jackson; C H Meyer; D G Nishimura; A Macovski
Journal:  IEEE Trans Med Imaging       Date:  1991       Impact factor: 10.048

4.  Image reconstruction by regularized nonlinear inversion--joint estimation of coil sensitivities and image content.

Authors:  Martin Uecker; Thorsten Hohage; Kai Tobias Block; Jens Frahm
Journal:  Magn Reson Med       Date:  2008-09       Impact factor: 4.668

5.  Fast reduction of undersampling artifacts in radial MR angiography with 3D total variation on graphics hardware.

Authors:  Florian Knoll; Markus Unger; Clemens Diwoky; Christian Clason; Thomas Pock; Rudolf Stollberger
Journal:  MAGMA       Date:  2010-03-30       Impact factor: 2.310

6.  Accelerating the nonequispaced fast Fourier transform on commodity graphics hardware.

Authors:  T S Sorensen; T Schaeffter; K O Noe; M S Hansen
Journal:  IEEE Trans Med Imaging       Date:  2008-04       Impact factor: 10.048

7.  Anatomically constrained reconstruction from noisy data.

Authors:  Justin P Haldar; Diego Hernando; Sheng-Kwei Song; Zhi-Pei Liang
Journal:  Magn Reson Med       Date:  2008-04       Impact factor: 4.668

8.  Online real-time reconstruction of adaptive TSENSE with commodity CPU/GPU hardware.

Authors:  Sébastien Roujol; Baudouin Denis de Senneville; Erkki Vahala; Thomas Sangild Sørensen; Chrit Moonen; Mario Ries
Journal:  Magn Reson Med       Date:  2009-12       Impact factor: 4.668

9.  Fast l₁-SPIRiT compressed sensing parallel imaging MRI: scalable parallel implementation and clinically feasible runtime.

Authors:  Mark Murphy; Marcus Alley; James Demmel; Kurt Keutzer; Shreyas Vasanawala; Michael Lustig
Journal:  IEEE Trans Med Imaging       Date:  2012-02-15       Impact factor: 10.048

10.  Second order total generalized variation (TGV) for MRI.

Authors:  Florian Knoll; Kristian Bredies; Thomas Pock; Rudolf Stollberger
Journal:  Magn Reson Med       Date:  2010-12-08       Impact factor: 4.668

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  11 in total

Review 1.  Recommendations for real-time speech MRI.

Authors:  Sajan Goud Lingala; Brad P Sutton; Marc E Miquel; Krishna S Nayak
Journal:  J Magn Reson Imaging       Date:  2015-07-14       Impact factor: 4.813

2.  Co-registration and distortion correction of diffusion and anatomical images based on inverse contrast normalization.

Authors:  Chitresh Bhushan; Justin P Haldar; Soyoung Choi; Anand A Joshi; David W Shattuck; Richard M Leahy
Journal:  Neuroimage       Date:  2015-03-27       Impact factor: 6.556

3.  High-resolution whole-brain DCE-MRI using constrained reconstruction: Prospective clinical evaluation in brain tumor patients.

Authors:  Yi Guo; R Marc Lebel; Yinghua Zhu; Sajan Goud Lingala; Mark S Shiroishi; Meng Law; Krishna Nayak
Journal:  Med Phys       Date:  2016-05       Impact factor: 4.071

Review 4.  A survey of GPU-based acceleration techniques in MRI reconstructions.

Authors:  Haifeng Wang; Hanchuan Peng; Yuchou Chang; Dong Liang
Journal:  Quant Imaging Med Surg       Date:  2018-03

5.  Correction of excitation profile in Zero Echo Time (ZTE) imaging using quadratic phase-modulated RF pulse excitation and iterative reconstruction.

Authors:  Cheng Li; Jeremy F Magland; Alan C Seifert; Felix W Wehrli
Journal:  IEEE Trans Med Imaging       Date:  2014-04       Impact factor: 10.048

6.  Improved B0 -distortion correction in diffusion MRI using interlaced q-space sampling and constrained reconstruction.

Authors:  Chitresh Bhushan; Anand A Joshi; Richard M Leahy; Justin P Haldar
Journal:  Magn Reson Med       Date:  2013-11-11       Impact factor: 4.668

7.  3D multislab, multishot acquisition for fast, whole-brain MR elastography with high signal-to-noise efficiency.

Authors:  Curtis L Johnson; Joseph L Holtrop; Matthew D J McGarry; John B Weaver; Keith D Paulsen; John G Georgiadis; Bradley P Sutton
Journal:  Magn Reson Med       Date:  2014-02       Impact factor: 4.668

8.  High-resolution dynamic speech imaging with joint low-rank and sparsity constraints.

Authors:  Maojing Fu; Bo Zhao; Christopher Carignan; Ryan K Shosted; Jamie L Perry; David P Kuehn; Zhi-Pei Liang; Bradley P Sutton
Journal:  Magn Reson Med       Date:  2014-06-09       Impact factor: 4.668

9.  Accelerated Computing in Magnetic Resonance Imaging: Real-Time Imaging Using Nonlinear Inverse Reconstruction.

Authors:  Sebastian Schaetz; Dirk Voit; Jens Frahm; Martin Uecker
Journal:  Comput Math Methods Med       Date:  2017-12-31       Impact factor: 2.238

10.  Spatially-segmented undersampled MRI temperature reconstruction for transcranial MR-guided focused ultrasound.

Authors:  Pooja Gaur; Beat Werner; Xue Feng; Samuel W Fielden; Craig H Meyer; William A Grissom
Journal:  J Ther Ultrasound       Date:  2017-05-30
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