Literature DB >> 23681063

Mechanisms and models of somatic cell reprogramming.

Yosef Buganim1, Dina A Faddah, Rudolf Jaenisch.   

Abstract

Conversion of somatic cells to pluripotency by defined factors is a long and complex process that yields embryonic-stem-cell-like cells that vary in their developmental potential. To improve the quality of resulting induced pluripotent stem cells (iPSCs), which is important for potential therapeutic applications, and to address fundamental questions about control of cell identity, molecular mechanisms of the reprogramming process must be understood. Here we discuss recent discoveries regarding the role of reprogramming factors in remodelling the genome, including new insights into the function of MYC, and describe the different phases, markers and emerging models of reprogramming.

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Year:  2013        PMID: 23681063      PMCID: PMC4060150          DOI: 10.1038/nrg3473

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  129 in total

1.  Directly reprogrammed fibroblasts show global epigenetic remodeling and widespread tissue contribution.

Authors:  Nimet Maherali; Rupa Sridharan; Wei Xie; Jochen Utikal; Sarah Eminli; Katrin Arnold; Matthias Stadtfeld; Robin Yachechko; Jason Tchieu; Rudolf Jaenisch; Kathrin Plath; Konrad Hochedlinger
Journal:  Cell Stem Cell       Date:  2007-06-07       Impact factor: 24.633

2.  H3K9 methylation is a barrier during somatic cell reprogramming into iPSCs.

Authors:  Jiekai Chen; He Liu; Jing Liu; Jing Qi; Bei Wei; Jiaqi Yang; Hanquan Liang; You Chen; Jing Chen; Yaran Wu; Lin Guo; Jieying Zhu; Xiangjie Zhao; Tianran Peng; Yixin Zhang; Shen Chen; Xuejia Li; Dongwei Li; Tao Wang; Duanqing Pei
Journal:  Nat Genet       Date:  2012-12-02       Impact factor: 38.330

3.  Low incidence of DNA sequence variation in human induced pluripotent stem cells generated by nonintegrating plasmid expression.

Authors:  Linzhao Cheng; Nancy F Hansen; Ling Zhao; Yutao Du; Chunlin Zou; Frank X Donovan; Bin-Kuan Chou; Guangyu Zhou; Shijie Li; Sarah N Dowey; Zhaohui Ye; Settara C Chandrasekharappa; Huanming Yang; James C Mullikin; P Paul Liu
Journal:  Cell Stem Cell       Date:  2012-03-02       Impact factor: 24.633

4.  The RNA Pol II elongation factor Ell3 marks enhancers in ES cells and primes future gene activation.

Authors:  Chengqi Lin; Alexander S Garruss; Zhuojuan Luo; Fengli Guo; Ali Shilatifard
Journal:  Cell       Date:  2012-12-27       Impact factor: 41.582

5.  Early-stage epigenetic modification during somatic cell reprogramming by Parp1 and Tet2.

Authors:  Claudia A Doege; Keiichi Inoue; Toru Yamashita; David B Rhee; Skylar Travis; Ryousuke Fujita; Paolo Guarnieri; Govind Bhagat; William B Vanti; Alan Shih; Ross L Levine; Sara Nik; Emily I Chen; Asa Abeliovich
Journal:  Nature       Date:  2012-08-30       Impact factor: 49.962

6.  In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state.

Authors:  Marius Wernig; Alexander Meissner; Ruth Foreman; Tobias Brambrink; Manching Ku; Konrad Hochedlinger; Bradley E Bernstein; Rudolf Jaenisch
Journal:  Nature       Date:  2007-06-06       Impact factor: 49.962

7.  iPS cells produce viable mice through tetraploid complementation.

Authors:  Xiao-yang Zhao; Wei Li; Zhuo Lv; Lei Liu; Man Tong; Tang Hai; Jie Hao; Chang-long Guo; Qing-wen Ma; Liu Wang; Fanyi Zeng; Qi Zhou
Journal:  Nature       Date:  2009-09-03       Impact factor: 49.962

8.  Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts.

Authors:  Masato Nakagawa; Michiyo Koyanagi; Koji Tanabe; Kazutoshi Takahashi; Tomoko Ichisaka; Takashi Aoi; Keisuke Okita; Yuji Mochiduki; Nanako Takizawa; Shinya Yamanaka
Journal:  Nat Biotechnol       Date:  2007-11-30       Impact factor: 54.908

9.  Variability in the generation of induced pluripotent stem cells: importance for disease modeling.

Authors:  Alejandra M Vitale; Nicholas A Matigian; Sugandha Ravishankar; Bernadette Bellette; Stephen A Wood; Ernst J Wolvetang; Alan Mackay-Sim
Journal:  Stem Cells Transl Med       Date:  2012-09-07       Impact factor: 6.940

10.  Transdifferentiation by defined factors as a powerful research tool to address basic biological questions.

Authors:  Yosef Buganim; Rudolf Jaenisch
Journal:  Cell Cycle       Date:  2012-11-19       Impact factor: 4.534

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  204 in total

1.  NF-κB activation impairs somatic cell reprogramming in ageing.

Authors:  Clara Soria-Valles; Fernando G Osorio; Ana Gutiérrez-Fernández; Alejandro De Los Angeles; Clara Bueno; Pablo Menéndez; José I Martín-Subero; George Q Daley; José M P Freije; Carlos López-Otín
Journal:  Nat Cell Biol       Date:  2015-07-27       Impact factor: 28.824

2.  MiR-124 and Small Molecules Synergistically Regulate the Generation of Neuronal Cells from Rat Cortical Reactive Astrocytes.

Authors:  Yangyang Zheng; Zhehao Huang; Jinying Xu; Kun Hou; Yifei Yu; Shuang Lv; Lin Chen; Yulin Li; Chengshi Quan; Guangfan Chi
Journal:  Mol Neurobiol       Date:  2021-03-16       Impact factor: 5.590

3.  Opposing roles of miR-294 and MBNL1/2 in shaping the gene regulatory network of embryonic stem cells.

Authors:  Da-Ren Wu; Kai-Li Gu; Jian-Cheng Yu; Xing Fu; Xi-Wen Wang; Wen-Ting Guo; Le-Qi Liao; Hong Zhu; Xiao-Shan Zhang; Jingyi Hui; Yangming Wang
Journal:  EMBO Rep       Date:  2018-05-07       Impact factor: 8.807

Review 4.  Application of human induced pluripotent stem cells to model fibrodysplasia ossificans progressiva.

Authors:  Emilie Barruet; Edward C Hsiao
Journal:  Bone       Date:  2017-07-14       Impact factor: 4.398

Review 5.  The chemistry of regulation of genes and other things.

Authors:  Mark Ptashne
Journal:  J Biol Chem       Date:  2014-01-02       Impact factor: 5.157

6.  Biophysical regulation of epigenetic state and cell reprogramming.

Authors:  Timothy L Downing; Jennifer Soto; Constant Morez; Timothee Houssin; Ashley Fritz; Falei Yuan; Julia Chu; Shyam Patel; David V Schaffer; Song Li
Journal:  Nat Mater       Date:  2013-10-20       Impact factor: 43.841

Review 7.  Mechanisms underlying the formation of induced pluripotent stem cells.

Authors:  Federico González; Danwei Huangfu
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2015-09-18       Impact factor: 5.814

8.  Mouse embryonic stem cells have underdeveloped antiviral mechanisms that can be exploited for the development of mRNA-mediated gene expression strategy.

Authors:  Ruoxing Wang; Chengwen Teng; Joseph Spangler; Jundi Wang; Faqing Huang; Yan-Lin Guo
Journal:  Stem Cells Dev       Date:  2013-12-20       Impact factor: 3.272

9.  Re-patterning of H3K27me3, H3K4me3 and DNA methylation during fibroblast conversion into induced cardiomyocytes.

Authors:  Ziqing Liu; Olivia Chen; Michael Zheng; Li Wang; Yang Zhou; Chaoying Yin; Jiandong Liu; Li Qian
Journal:  Stem Cell Res       Date:  2016-02-27       Impact factor: 2.020

Review 10.  Current status in cancer cell reprogramming and its clinical implications.

Authors:  Kenan Izgi; Halit Canatan; Banu Iskender
Journal:  J Cancer Res Clin Oncol       Date:  2016-09-12       Impact factor: 4.553

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