Literature DB >> 24385432

The chemistry of regulation of genes and other things.

Mark Ptashne1.   

Abstract

Keywords:  Activators; Cooperativity; DNA-binding Protein; Gene Regulation; Genetic Switch; Nucleosome; Recruitment; Repressors; Specificity; Transcription

Mesh:

Year:  2014        PMID: 24385432      PMCID: PMC3937619          DOI: 10.1074/jbc.X114.547323

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


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  97 in total

Review 1.  Fundamentally different logic of gene regulation in eukaryotes and prokaryotes.

Authors:  K Struhl
Journal:  Cell       Date:  1999-07-09       Impact factor: 41.582

2.  Octamerization of lambda CI repressor is needed for effective repression of P(RM) and efficient switching from lysogeny.

Authors:  I B Dodd; A J Perkins; D Tsemitsidis; J B Egan
Journal:  Genes Dev       Date:  2001-11-15       Impact factor: 11.361

3.  Mechanism of Mediator recruitment by tandem Gcn4 activation domains and three Gal11 activator-binding domains.

Authors:  Eric Herbig; Linda Warfield; Lisa Fish; James Fishburn; Bruce A Knutson; Beth Moorefield; Derek Pacheco; Steven Hahn
Journal:  Mol Cell Biol       Date:  2010-03-22       Impact factor: 4.272

4.  Separation of DNA binding from the transcription-activating function of a eukaryotic regulatory protein.

Authors:  L Keegan; G Gill; M Ptashne
Journal:  Science       Date:  1986-02-14       Impact factor: 47.728

5.  DNA loops induced by cooperative binding of lambda repressor.

Authors:  J Griffith; A Hochschild; M Ptashne
Journal:  Nature       Date:  1986 Aug 21-27       Impact factor: 49.962

6.  Structure of the lambda operators.

Authors:  T Maniatis; M Ptashne
Journal:  Nature       Date:  1973-11-16       Impact factor: 49.962

7.  Cooperative binding of lambda repressors to sites separated by integral turns of the DNA helix.

Authors:  A Hochschild; M Ptashne
Journal:  Cell       Date:  1986-03-14       Impact factor: 41.582

Review 8.  lambda Repressor and cro--components of an efficient molecular switch.

Authors:  A D Johnson; A R Poteete; G Lauer; R T Sauer; G K Ackers; M Ptashne
Journal:  Nature       Date:  1981-11-19       Impact factor: 49.962

9.  Changing the binding specificity of a repressor by redesigning an alpha-helix.

Authors:  R P Wharton; M Ptashne
Journal:  Nature       Date:  1985 Aug 15-21       Impact factor: 49.962

10.  Specific binding of the lambda phage repressor to lambda DNA.

Authors:  M Ptashne
Journal:  Nature       Date:  1967-04-15       Impact factor: 49.962

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  19 in total

1.  What do you mean, "epigenetic"?

Authors:  Carrie Deans; Keith A Maggert
Journal:  Genetics       Date:  2015-04       Impact factor: 4.562

2.  Inactivation of a GAL4-like transcription factor improves cell fitness and product yield in glycoengineered Pichia pastoris strains.

Authors:  Bo Jiang; Rebecca Argyros; John Bukowski; Stephanie Nelson; Nathan Sharkey; Sehoon Kim; Victoria Copeland; Robert C Davidson; Ronghua Chen; Jun Zhuang; Natarajan Sethuraman; Terrance A Stadheim
Journal:  Appl Environ Microbiol       Date:  2014-10-24       Impact factor: 4.792

Review 3.  Network inference in systems biology: recent developments, challenges, and applications.

Authors:  Michael M Saint-Antoine; Abhyudai Singh
Journal:  Curr Opin Biotechnol       Date:  2020-01-09       Impact factor: 9.740

Review 4.  Maintenance of postmitotic neuronal cell identity.

Authors:  Evan S Deneris; Oliver Hobert
Journal:  Nat Neurosci       Date:  2014-06-15       Impact factor: 24.884

Review 5.  The rewiring of transcription circuits in evolution.

Authors:  Alexander D Johnson
Journal:  Curr Opin Genet Dev       Date:  2017-11-08       Impact factor: 5.578

Review 6.  Flowering Locus C's Lessons: Conserved Chromatin Switches Underpinning Developmental Timing and Adaptation.

Authors:  Jo Hepworth; Caroline Dean
Journal:  Plant Physiol       Date:  2015-07-06       Impact factor: 8.340

Review 7.  The 3D Genome as Moderator of Chromosomal Communication.

Authors:  Job Dekker; Leonid Mirny
Journal:  Cell       Date:  2016-03-10       Impact factor: 41.582

8.  Polycomb Responds to Low Levels of Transcription.

Authors:  Georgina Berrozpe; Gene O Bryant; Katherine Warpinski; Dan Spagna; Santosh Narayan; Shivangi Shah; Mark Ptashne
Journal:  Cell Rep       Date:  2017-07-25       Impact factor: 9.423

9.  Transcription factor binding predicts histone modifications in human cell lines.

Authors:  Dan Benveniste; Hans-Joachim Sonntag; Guido Sanguinetti; Duncan Sproul
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-03       Impact factor: 11.205

10.  GABPα and CREB1 Binding to Double Nucleotide Polymorphisms of Their Consensus Motifs and Cooperative Binding to the Composite ETS ⇔ CRE Motif (ACCGGAAGTGACGTCA).

Authors:  Nima Assad; Desiree Tillo; Sreejana Ray; Alexa Dzienny; Peter C FitzGerald; Charles Vinson
Journal:  ACS Omega       Date:  2019-06-06
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