Literature DB >> 23665583

Turning catalytically inactive human Argonaute proteins into active slicer enzymes.

Judith Hauptmann1, Anne Dueck, Simone Harlander, Janina Pfaff, Rainer Merkl, Gunter Meister.   

Abstract

Argonaute proteins interact with small RNAs that guide them to complementary target RNAs, thus leading to inhibition of gene expression. Some but not all Argonaute proteins are endonucleases and can cleave the complementary target RNA. Here, we have mutated inactive human Ago1 and Ago3 and generated catalytic Argonaute proteins. We find that two short sequence elements at the N terminus are important for activity. In addition, PIWI-domain mutations in Ago1 may misarrange the catalytic center. Our work helps in understanding of the structural requirements that make an Argonaute protein an active endonucleolytic enzyme.

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Year:  2013        PMID: 23665583     DOI: 10.1038/nsmb.2577

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  26 in total

Review 1.  Slicer and the argonautes.

Authors:  Niraj H Tolia; Leemor Joshua-Tor
Journal:  Nat Chem Biol       Date:  2007-01       Impact factor: 15.040

2.  Cleavage of the siRNA passenger strand during RISC assembly in human cells.

Authors:  Philipp J F Leuschner; Stefan L Ameres; Stephanie Kueng; Javier Martinez
Journal:  EMBO Rep       Date:  2006-01-20       Impact factor: 8.807

Review 3.  Biogenesis of small RNAs in animals.

Authors:  V Narry Kim; Jinju Han; Mikiko C Siomi
Journal:  Nat Rev Mol Cell Biol       Date:  2009-02       Impact factor: 94.444

Review 4.  PIWI-interacting small RNAs: the vanguard of genome defence.

Authors:  Mikiko C Siomi; Kaoru Sato; Dubravka Pezic; Alexei A Aravin
Journal:  Nat Rev Mol Cell Biol       Date:  2011-04       Impact factor: 94.444

5.  Increased siRNA duplex stability correlates with reduced off-target and elevated on-target effects.

Authors:  Sebastian Petri; Anne Dueck; Gerhard Lehmann; Nicholas Putz; Sabine Rüdel; Elisabeth Kremmer; Gunter Meister
Journal:  RNA       Date:  2011-03-02       Impact factor: 4.942

6.  Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation.

Authors:  Tim A Rand; Sean Petersen; Fenghe Du; Xiaodong Wang
Journal:  Cell       Date:  2005-11-03       Impact factor: 41.582

7.  Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.

Authors:  W Kabsch; C Sander
Journal:  Biopolymers       Date:  1983-12       Impact factor: 2.505

8.  Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis.

Authors:  Jr-Shiuan Yang; Thomas Maurin; Nicolas Robine; Kasper D Rasmussen; Kate L Jeffrey; Rohit Chandwani; Eirini P Papapetrou; Michel Sadelain; Dónal O'Carroll; Eric C Lai
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-10       Impact factor: 11.205

9.  Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs.

Authors:  Gunter Meister; Markus Landthaler; Agnieszka Patkaniowska; Yair Dorsett; Grace Teng; Thomas Tuschl
Journal:  Mol Cell       Date:  2004-07-23       Impact factor: 17.970

10.  Structure of yeast Argonaute with guide RNA.

Authors:  Kotaro Nakanishi; David E Weinberg; David P Bartel; Dinshaw J Patel
Journal:  Nature       Date:  2012-06-20       Impact factor: 49.962

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  49 in total

Review 1.  RNAi in Plants: An Argonaute-Centered View.

Authors:  Xiaofeng Fang; Yijun Qi
Journal:  Plant Cell       Date:  2016-02-11       Impact factor: 11.277

2.  Biochemical isolation of Argonaute protein complexes by Ago-APP.

Authors:  Judith Hauptmann; Daniel Schraivogel; Astrid Bruckmann; Sudhir Manickavel; Leonhard Jakob; Norbert Eichner; Janina Pfaff; Marc Urban; Stefanie Sprunck; Markus Hafner; Thomas Tuschl; Rainer Deutzmann; Gunter Meister
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-08       Impact factor: 11.205

Review 3.  Argonaute proteins: functional insights and emerging roles.

Authors:  Gunter Meister
Journal:  Nat Rev Genet       Date:  2013-06-04       Impact factor: 53.242

4.  Activating silent argonautes.

Authors:  Mary Anne Kidwell; Jennifer A Doudna
Journal:  Nat Struct Mol Biol       Date:  2013-07       Impact factor: 15.369

5.  The Slicer Activity of ARGONAUTE1 Is Required Specifically for the Phasing, Not Production, of Trans-Acting Short Interfering RNAs in Arabidopsis.

Authors:  Laura Arribas-Hernández; Antonin Marchais; Christian Poulsen; Bettina Haase; Judith Hauptmann; Vladimir Benes; Gunter Meister; Peter Brodersen
Journal:  Plant Cell       Date:  2016-06-27       Impact factor: 11.277

6.  Homeologs of the Nicotiana benthamiana Antiviral ARGONAUTE1 Show Different Susceptibilities to microRNA168-Mediated Control.

Authors:  Torsten Gursinsky; Walter Pirovano; Giorgio Gambino; Susann Friedrich; Sven-Erik Behrens; Vitantonio Pantaleo
Journal:  Plant Physiol       Date:  2015-05-26       Impact factor: 8.340

Review 7.  RNA-induced initiation of transcriptional silencing (RITS) complex structure and function.

Authors:  Sonali Bhattacharjee; Benjamin Roche; Robert A Martienssen
Journal:  RNA Biol       Date:  2019-06-18       Impact factor: 4.652

8.  Structural Basis for Target-Directed MicroRNA Degradation.

Authors:  Jessica Sheu-Gruttadauria; Paulina Pawlica; Shannon M Klum; Sonia Wang; Therese A Yario; Nicole T Schirle Oakdale; Joan A Steitz; Ian J MacRae
Journal:  Mol Cell       Date:  2019-07-25       Impact factor: 17.970

9.  Multidomain Convergence of Argonaute during RISC Assembly Correlates with the Formation of Internal Water Clusters.

Authors:  Mi Seul Park; Raul Araya-Secchi; James A Brackbill; Hong-Duc Phan; Audrey C Kehling; Ekram W Abd El-Wahab; Daniel M Dayeh; Marcos Sotomayor; Kotaro Nakanishi
Journal:  Mol Cell       Date:  2019-07-16       Impact factor: 17.970

10.  miR-346 Up-regulates Argonaute 2 (AGO2) Protein Expression to Augment the Activity of Other MicroRNAs (miRNAs) and Contributes to Cervical Cancer Cell Malignancy.

Authors:  Junfei Guo; Jing Lv; Min Liu; Hua Tang
Journal:  J Biol Chem       Date:  2015-10-30       Impact factor: 5.157

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