Literature DB >> 26869699

RNAi in Plants: An Argonaute-Centered View.

Xiaofeng Fang1, Yijun Qi2.   

Abstract

Argonaute (AGO) family proteins are effectors of RNAi in eukaryotes. AGOs bind small RNAs and use them as guides to silence target genes or transposable elements at the transcriptional or posttranscriptional level. Eukaryotic AGO proteins share common structural and biochemical properties and function through conserved core mechanisms in RNAi pathways, yet plant AGOs have evolved specialized and diversified functions. This Review covers the general features of AGO proteins and highlights recent progress toward our understanding of the mechanisms and functions of plant AGOs.
© 2016 American Society of Plant Biologists. All rights reserved.

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Year:  2016        PMID： 26869699      PMCID： PMC4790879          DOI： 10.1105/tpc.15.00920

Source DB:  PubMed          Journal:  Plant Cell        ISSN： 1040-4651            Impact factor:   11.277


  176 in total

1.  Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation.

Authors:  Yasuyuki Onodera; Jeremy R Haag; Thomas Ream; Pedro Costa Nunes; Olga Pontes; Craig S Pikaard
Journal:  Cell       Date:  2005-03-11       Impact factor: 41.582

2.  RNA polymerase IV directs silencing of endogenous DNA.

Authors:  A J Herr; M B Jensen; T Dalmay; D C Baulcombe
Journal:  Science       Date:  2005-02-03       Impact factor: 47.728

3.  A protein sensor for siRNA asymmetry.

Authors:  Yukihide Tomari; Christian Matranga; Benjamin Haley; Natalia Martinez; Phillip D Zamore
Journal:  Science       Date:  2004-11-19       Impact factor: 47.728

4.  Purified Argonaute2 and an siRNA form recombinant human RISC.

Authors:  Fabiola V Rivas; Niraj H Tolia; Ji-Joon Song; Juan P Aragon; Jidong Liu; Gregory J Hannon; Leemor Joshua-Tor
Journal:  Nat Struct Mol Biol       Date:  2005-03-30       Impact factor: 15.369

5.  Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing.

Authors:  Chryssa Kanellopoulou; Stefan A Muljo; Andrew L Kung; Shridar Ganesan; Ronny Drapkin; Thomas Jenuwein; David M Livingston; Klaus Rajewsky
Journal:  Genes Dev       Date:  2005-02-15       Impact factor: 11.361

6.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

7.  Structural insights into mRNA recognition from a PIWI domain-siRNA guide complex.

Authors:  James S Parker; S Mark Roe; David Barford
Journal:  Nature       Date:  2005-03-31       Impact factor: 49.962

8.  Role of the ZWILLE gene in the regulation of central shoot meristem cell fate during Arabidopsis embryogenesis.

Authors:  B Moussian; H Schoof; A Haecker; G Jürgens; T Laux
Journal:  EMBO J       Date:  1998-03-16       Impact factor: 11.598

9.  AGO1 defines a novel locus of Arabidopsis controlling leaf development.

Authors:  K Bohmert; I Camus; C Bellini; D Bouchez; M Caboche; C Benning
Journal:  EMBO J       Date:  1998-01-02       Impact factor: 11.598

10.  The PINHEAD/ZWILLE gene acts pleiotropically in Arabidopsis development and has overlapping functions with the ARGONAUTE1 gene.

Authors:  K Lynn; A Fernandez; M Aida; J Sedbrook; M Tasaka; P Masson; M K Barton
Journal:  Development       Date:  1999-02       Impact factor: 6.868
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  82 in total

1.  The Plant Cell Reviews Small RNA and Chromatin Dynamics: From Small Genetic Circuits to Complex Genomes.

Authors:  Nancy A Eckardt
Journal:  Plant Cell       Date:  2016-02-11       Impact factor: 11.277

2.  Identification of a New Host Factor Required for Antiviral RNAi and Amplification of Viral siRNAs.

Authors:  Zhongxin Guo; Xian-Bing Wang; Ying Wang; Wan-Xiang Li; Amit Gal-On; Shou-Wei Ding
Journal:  Plant Physiol       Date:  2017-11-28       Impact factor: 8.340

3.  Phase separation of SERRATE drives dicing body assembly and promotes miRNA processing in Arabidopsis.

Authors:  Dongqi Xie; Min Chen; Jinrong Niu; Liang Wang; Yan Li; Xiaofeng Fang; Pilong Li; Yijun Qi
Journal:  Nat Cell Biol       Date:  2020-12-07       Impact factor: 28.824

4.  Saddle Up, Soybean Seed Pigments: Argonaute5 in Spatially Regulated Silencing of Chalcone Synthase Genes.

Authors:  Jennifer Mach
Journal:  Plant Cell       Date:  2017-04-10       Impact factor: 11.277

Review 5.  Messages on small RNA duplexes in plants.

Authors:  Taichiro Iki
Journal:  J Plant Res       Date:  2016-11-23       Impact factor: 2.629

6.  The Intrinsically Disordered Protein CARP9 Bridges HYL1 to AGO1 in the Nucleus to Promote MicroRNA Activity.

Authors:  Ariel H Tomassi; Delfina A Re; Facundo Romani; Damian A Cambiagno; Lucía Gonzalo; Javier E Moreno; Agustin L Arce; Pablo A Manavella
Journal:  Plant Physiol       Date:  2020-07-07       Impact factor: 8.340

7.  Degradation of unmethylated miRNA/miRNA*s by a DEDDy-type 3' to 5' exoribonuclease Atrimmer 2 in Arabidopsis.

Authors:  Xiaoyan Wang; Yuan Wang; Yongchao Dou; Lu Chen; Junli Wang; Ning Jiang; Chunce Guo; Qingqing Yao; Chizao Wang; Lin Liu; Bin Yu; Binglian Zheng; Julia A Chekanova; Jinbiao Ma; Guodong Ren
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-25       Impact factor: 11.205

8.  Identification of microRNA-target modules from rice variety Pusa Basmati-1 under high temperature and salt stress.

Authors:  Shikha Goel; Kavita Goswami; Vimal K Pandey; Maneesha Pandey; Neeti Sanan-Mishra
Journal:  Funct Integr Genomics       Date:  2019-05-24       Impact factor: 3.410

9.  pssRNAit: A Web Server for Designing Effective and Specific Plant siRNAs with Genome-Wide Off-Target Assessment.

Authors:  Firoz Ahmed; Muthappa Senthil-Kumar; Xinbin Dai; Vemanna S Ramu; Seonghee Lee; Kirankumar S Mysore; Patrick Xuechun Zhao
Journal:  Plant Physiol       Date:  2020-07-10       Impact factor: 8.340

10.  TRANSPORTIN1 Promotes the Association of MicroRNA with ARGONAUTE1 in Arabidopsis.

Authors:  Yuwei Cui; Xiaofeng Fang; Yijun Qi
Journal:  Plant Cell       Date:  2016-09-23       Impact factor: 11.277
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