Literature DB >> 23634100

(Z)-3-(3,4-Dimeth-oxy-benzyl-idene)-2,3-dihydro-1,5-benzothia-zepin-4(5H)-one.

M Bakthadoss1, R Selvakumar, N Manikandan, S Murugavel.   

Abstract

In the title compound, C18H17NO3S, the seven-membered thia-zepine ring adopts a slightly distorted sofa conformation. The dihedral angle between the mean plane of the benzothia-zepine ring system and the benzene ring is 5.9 (1)°. The mol-ecular conformation is stabilized by an intra-molecular C-H⋯S hydrogen bond, which generates an S(7) ring motif. In the crystal, N-H⋯O and C-H⋯O hydrogen bonds link inversion-related mol-ecules into dimers, incorporating R 1 (2)(6) and R 2 (2)(8) ring motifs; the acceptor O atom is bifurcated. These dimers are further linked by C-H⋯O hydrogen bonds, forming supra-molecular tapes running along the a axis. These are connected into the three-dimensional architecture by C-H⋯π inter-actions.

Entities:  

Year:  2013        PMID: 23634100      PMCID: PMC3629613          DOI: 10.1107/S1600536813007423

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmaceutical properties of thia­zepine derivatives, see: Tomascovic et al. (2000 ▶); Rajsner et al. (1971 ▶); Metys et al. (1965 ▶). For related structures, see: Lakshmanan et al. (2012 ▶); Selvakumar et al. (2012 ▶); Murugavel et al. (2013 ▶). For ring-puckering parameters, see: Cremer & Pople (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C18H17NO3S M = 327.39 Triclinic, a = 7.0249 (4) Å b = 10.7949 (7) Å c = 10.8826 (7) Å α = 91.783 (3)° β = 97.562 (2)° γ = 108.512 (2)° V = 773.42 (8) Å3 Z = 2 Mo Kα radiation μ = 0.22 mm−1 T = 293 K 0.23 × 0.21 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.950, T max = 0.967 14052 measured reflections 3082 independent reflections 2545 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.121 S = 1.06 3082 reflections 210 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813007423/tk5207sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813007423/tk5207Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813007423/tk5207Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H17NO3SZ = 2
Mr = 327.39F(000) = 344
Triclinic, P1Dx = 1.406 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.0249 (4) ÅCell parameters from 3172 reflections
b = 10.7949 (7) Åθ = 2.0–26.4°
c = 10.8826 (7) ŵ = 0.22 mm1
α = 91.783 (3)°T = 293 K
β = 97.562 (2)°Block, colourless
γ = 108.512 (2)°0.23 × 0.21 × 0.15 mm
V = 773.42 (8) Å3
Bruker APEXII CCD diffractometer3082 independent reflections
Radiation source: fine-focus sealed tube2545 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
Detector resolution: 10.0 pixels mm-1θmax = 26.4°, θmin = 2.0°
ω scansh = −7→8
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −13→13
Tmin = 0.950, Tmax = 0.967l = −13→13
14052 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0639P)2 + 0.2592P] where P = (Fo2 + 2Fc2)/3
3082 reflections(Δ/σ)max < 0.001
210 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4597 (3)0.39262 (18)0.80434 (17)0.0376 (4)
H1A0.41480.32830.86370.045*
H1B0.60260.40690.80210.045*
C20.0821 (3)0.24463 (18)0.69445 (17)0.0380 (4)
C3−0.0277 (3)0.1295 (2)0.6198 (2)0.0540 (6)
H30.02830.10520.55400.065*
C4−0.2145 (4)0.0518 (2)0.6406 (2)0.0652 (7)
H4−0.2850−0.02340.58880.078*
C5−0.2977 (3)0.0860 (2)0.7392 (2)0.0570 (6)
H5−0.42390.03350.75500.068*
C6−0.1924 (3)0.19819 (19)0.81356 (19)0.0431 (5)
H6−0.24900.21970.88030.052*
C7−0.0035 (3)0.28146 (16)0.79304 (16)0.0329 (4)
C80.2416 (2)0.50716 (17)0.89652 (15)0.0301 (4)
C90.4315 (2)0.51723 (17)0.84463 (15)0.0313 (4)
C100.5649 (3)0.63650 (18)0.83993 (16)0.0353 (4)
H100.53260.70630.87350.042*
C110.7565 (3)0.67060 (18)0.78813 (16)0.0355 (4)
C120.7840 (3)0.6025 (2)0.68579 (18)0.0456 (5)
H120.67760.53060.64740.055*
C130.9667 (3)0.6391 (2)0.63934 (18)0.0452 (5)
H130.98140.59140.57060.054*
C141.1265 (3)0.74520 (18)0.69391 (17)0.0364 (4)
C151.1008 (3)0.81763 (18)0.79546 (18)0.0385 (4)
C160.9179 (3)0.78086 (18)0.84029 (18)0.0387 (4)
H160.90140.83060.90690.046*
C171.3474 (3)0.7111 (2)0.5578 (2)0.0515 (5)
H17A1.32160.62270.58040.077*
H17B1.48590.74700.54410.077*
H17C1.25840.71190.48310.077*
C181.2396 (4)1.0180 (2)0.9218 (2)0.0565 (6)
H18A1.13601.04940.88110.085*
H18B1.36481.08940.94070.085*
H18C1.19980.98130.99730.085*
N10.0766 (2)0.39577 (14)0.87516 (14)0.0350 (3)
H1−0.00380.39510.92850.042*
O10.23130 (18)0.59672 (12)0.96500 (12)0.0388 (3)
O21.31183 (19)0.78823 (14)0.65586 (13)0.0472 (4)
O31.2663 (2)0.92142 (15)0.84312 (17)0.0639 (5)
S10.31690 (7)0.33116 (5)0.65216 (5)0.04745 (18)
U11U22U33U12U13U23
C10.0290 (9)0.0432 (10)0.0405 (10)0.0104 (8)0.0101 (7)−0.0031 (8)
C20.0332 (9)0.0374 (9)0.0402 (10)0.0048 (8)0.0125 (7)−0.0046 (8)
C30.0504 (12)0.0454 (11)0.0578 (13)0.0012 (9)0.0200 (10)−0.0176 (10)
C40.0557 (14)0.0474 (13)0.0768 (17)−0.0076 (10)0.0229 (12)−0.0235 (11)
C50.0394 (11)0.0432 (11)0.0765 (16)−0.0072 (9)0.0224 (10)−0.0082 (10)
C60.0354 (10)0.0397 (10)0.0529 (12)0.0059 (8)0.0189 (8)−0.0014 (8)
C70.0286 (9)0.0314 (9)0.0375 (9)0.0070 (7)0.0084 (7)−0.0007 (7)
C80.0266 (8)0.0357 (9)0.0274 (8)0.0078 (7)0.0075 (6)0.0004 (7)
C90.0253 (8)0.0399 (9)0.0274 (8)0.0082 (7)0.0066 (6)−0.0016 (7)
C100.0294 (9)0.0417 (10)0.0324 (9)0.0075 (7)0.0086 (7)−0.0038 (7)
C110.0293 (9)0.0406 (10)0.0351 (9)0.0072 (7)0.0102 (7)0.0014 (7)
C120.0316 (10)0.0527 (12)0.0405 (10)−0.0037 (8)0.0099 (8)−0.0100 (9)
C130.0381 (10)0.0542 (12)0.0366 (10)0.0033 (9)0.0148 (8)−0.0115 (8)
C140.0284 (9)0.0411 (10)0.0388 (10)0.0065 (7)0.0142 (7)0.0015 (8)
C150.0304 (9)0.0337 (9)0.0481 (11)0.0034 (7)0.0141 (8)−0.0038 (8)
C160.0356 (10)0.0360 (9)0.0435 (10)0.0066 (8)0.0175 (8)−0.0052 (8)
C170.0429 (11)0.0603 (13)0.0533 (13)0.0135 (10)0.0249 (9)−0.0065 (10)
C180.0549 (13)0.0365 (10)0.0703 (15)0.0005 (9)0.0220 (11)−0.0138 (10)
N10.0284 (7)0.0387 (8)0.0366 (8)0.0058 (6)0.0151 (6)−0.0049 (6)
O10.0323 (6)0.0386 (7)0.0436 (7)0.0058 (5)0.0156 (5)−0.0079 (5)
O20.0335 (7)0.0492 (8)0.0555 (9)0.0030 (6)0.0238 (6)−0.0091 (6)
O30.0391 (8)0.0495 (8)0.0898 (12)−0.0093 (6)0.0316 (8)−0.0320 (8)
S10.0377 (3)0.0537 (3)0.0418 (3)−0.0013 (2)0.0190 (2)−0.0143 (2)
C1—C91.482 (2)C10—H100.9300
C1—S11.8058 (19)C11—C121.384 (3)
C1—H1A0.9700C11—C161.399 (3)
C1—H1B0.9700C12—C131.386 (3)
C2—C31.401 (3)C12—H120.9300
C2—C71.402 (2)C13—C141.375 (3)
C2—S11.7471 (18)C13—H130.9300
C3—C41.367 (3)C14—O21.361 (2)
C3—H30.9300C14—C151.398 (3)
C4—C51.381 (3)C15—O31.361 (2)
C4—H40.9300C15—C161.379 (2)
C5—C61.372 (3)C16—H160.9300
C5—H50.9300C17—O21.428 (2)
C6—C71.397 (2)C17—H17A0.9600
C6—H60.9300C17—H17B0.9600
C7—N11.413 (2)C17—H17C0.9600
C8—O11.229 (2)C18—O31.402 (2)
C8—N11.368 (2)C18—H18A0.9600
C8—C91.490 (2)C18—H18B0.9600
C9—C101.337 (2)C18—H18C0.9600
C10—C111.470 (2)N1—H10.8600
C9—C1—S1110.58 (13)C16—C11—C10119.12 (16)
C9—C1—H1A109.5C11—C12—C13121.42 (18)
S1—C1—H1A109.5C11—C12—H12119.3
C9—C1—H1B109.5C13—C12—H12119.3
S1—C1—H1B109.5C14—C13—C12120.63 (17)
H1A—C1—H1B108.1C14—C13—H13119.7
C3—C2—C7118.76 (17)C12—C13—H13119.7
C3—C2—S1115.26 (14)O2—C14—C13125.04 (16)
C7—C2—S1125.97 (14)O2—C14—C15115.91 (16)
C4—C3—C2122.1 (2)C13—C14—C15119.05 (16)
C4—C3—H3118.9O3—C15—C16125.11 (17)
C2—C3—H3118.9O3—C15—C14115.09 (15)
C3—C4—C5119.4 (2)C16—C15—C14119.80 (17)
C3—C4—H4120.3C15—C16—C11121.66 (17)
C5—C4—H4120.3C15—C16—H16119.2
C6—C5—C4119.4 (2)C11—C16—H16119.2
C6—C5—H5120.3O2—C17—H17A109.5
C4—C5—H5120.3O2—C17—H17B109.5
C5—C6—C7122.66 (18)H17A—C17—H17B109.5
C5—C6—H6118.7O2—C17—H17C109.5
C7—C6—H6118.7H17A—C17—H17C109.5
C6—C7—C2117.63 (16)H17B—C17—H17C109.5
C6—C7—N1114.53 (15)O3—C18—H18A109.5
C2—C7—N1127.83 (16)O3—C18—H18B109.5
O1—C8—N1117.55 (14)H18A—C18—H18B109.5
O1—C8—C9120.94 (15)O3—C18—H18C109.5
N1—C8—C9121.42 (15)H18A—C18—H18C109.5
C10—C9—C1124.92 (16)H18B—C18—H18C109.5
C10—C9—C8118.22 (16)C8—N1—C7139.93 (14)
C1—C9—C8116.85 (15)C8—N1—H1110.0
C9—C10—C11127.81 (17)C7—N1—H1110.0
C9—C10—H10116.1C14—O2—C17117.20 (15)
C11—C10—H10116.1C15—O3—C18118.52 (15)
C12—C11—C16117.39 (16)C2—S1—C199.66 (9)
C12—C11—C10123.42 (17)
C7—C2—C3—C4−0.5 (4)C11—C12—C13—C14−0.2 (3)
S1—C2—C3—C4−179.5 (2)C12—C13—C14—O2179.52 (19)
C2—C3—C4—C5−1.0 (4)C12—C13—C14—C15−1.4 (3)
C3—C4—C5—C60.8 (4)O2—C14—C15—O3−0.4 (3)
C4—C5—C6—C70.8 (4)C13—C14—C15—O3−179.59 (19)
C5—C6—C7—C2−2.2 (3)O2—C14—C15—C16−179.92 (17)
C5—C6—C7—N1176.7 (2)C13—C14—C15—C160.9 (3)
C3—C2—C7—C62.0 (3)O3—C15—C16—C11−178.25 (19)
S1—C2—C7—C6−179.12 (15)C14—C15—C16—C111.2 (3)
C3—C2—C7—N1−176.80 (19)C12—C11—C16—C15−2.7 (3)
S1—C2—C7—N12.1 (3)C10—C11—C16—C15−179.90 (18)
S1—C1—C9—C10−100.97 (18)O1—C8—N1—C7165.2 (2)
S1—C1—C9—C880.36 (17)C9—C8—N1—C7−18.2 (3)
O1—C8—C9—C10−21.0 (2)C6—C7—N1—C8−177.9 (2)
N1—C8—C9—C10162.49 (16)C2—C7—N1—C80.9 (4)
O1—C8—C9—C1157.79 (16)C13—C14—O2—C17−5.1 (3)
N1—C8—C9—C1−18.8 (2)C15—C14—O2—C17175.83 (18)
C1—C9—C10—C114.2 (3)C16—C15—O3—C18−17.0 (3)
C8—C9—C10—C11−177.11 (16)C14—C15—O3—C18163.5 (2)
C9—C10—C11—C1234.0 (3)C3—C2—S1—C1−145.03 (17)
C9—C10—C11—C16−149.01 (19)C7—C2—S1—C136.02 (19)
C16—C11—C12—C132.2 (3)C9—C1—S1—C2−85.92 (14)
C10—C11—C12—C13179.28 (19)
D—H···AD—HH···AD···AD—H···A
C12—H12···S10.932.763.605 (2)151
N1—H1···O1i0.862.122.967 (2)170
C6—H6···O1i0.932.523.318 (2)144
C5—H5···O3ii0.932.463.377 (3)167
C17—H17C···Cg1iii0.962.843.724 (2)154
C18—H18A···Cg1iv0.962.903.841 (3)166
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C2–C7 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C12—H12⋯S10.932.763.605 (2)151
N1—H1⋯O1i 0.862.122.967 (2)170
C6—H6⋯O1i 0.932.523.318 (2)144
C5—H5⋯O3ii 0.932.463.377 (3)167
C17—H17CCg1iii 0.962.843.724 (2)154
C18—H18ACg1iv 0.962.903.841 (3)166

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  [Derivative of 4,9-dihydrothieno(2,3-b)benzo(e)thiepine--a new type of effective antihistaminic].

Authors:  J Metys; J Metysová
Journal:  Acta Biol Med Ger       Date:  1965

3.  (Z)-3-(2-Meth-oxy-benz-yl)-1,5-benzo-thia-zepin-4(5H)-one.

Authors:  R Selvakumar; M Bakthadoss; D Lakshmanan; S Murugavel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-16

4.  (Z)-3-(2,4-Dichloro-benz-yl)-1,5-benzo-thia-zepin-4(5H)-one.

Authors:  S Murugavel; N Manikandan; R Selvakumar; M Bakthadoss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-23

5.  (Z)-3-(4-Chloro-benz-yl)-1,5-benzothia-zepin-4(5H)-one.

Authors:  D Lakshmanan; S Murugavel; R Selvakumar; M Bakthadoss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-16

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  3 in total

1.  (Z)-3-(3,4-Di-meth-oxy-benz-yl)-1,5-benzo-thia-zepin-4(5H)-one.

Authors:  R Selvakumar; M Bakthadoss; S Vijayakumar; S Murugavel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-13

2.  (Z)-3-(2,4-Dichloro-benz-yl)-1,5-benzo-thia-zepin-4(5H)-one.

Authors:  S Murugavel; N Manikandan; R Selvakumar; M Bakthadoss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-23

3.  3-(4-Methoxybenzyl)-1,5-benzo-thiazepin-4(5H)-one.

Authors:  R Selvakumar; M Bakthadoss; S Vijayakumar; S Murugavel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-10
  3 in total

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