Literature DB >> 22798806

(Z)-3-(4-Chloro-benz-yl)-1,5-benzothia-zepin-4(5H)-one.

D Lakshmanan, S Murugavel, R Selvakumar, M Bakthadoss.   

Abstract

In the title compound, C(16)H(12)ClNOS, the seven-membered thia-zepine ring adopts a distorted twisted boat conformation. The dihedral angle between the least-squares planes of the 1,5-benzothia-zepine ring system and the benzene ring is 50.2 (1)°. In the crystal, pairs of N-H⋯O hydrogen bonds link centrosymmetrically related mol-ecules into dimers, generating R(2) (2)(8) ring motifs. The crystal packing is further stabilized by π-π inter-actions [centroid-centroid distance = 3.763 (2) Å].

Entities:  

Year:  2012        PMID: 22798806      PMCID: PMC3393941          DOI: 10.1107/S1600536812026608

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmaceutical properties of thia­zepin derivatives, see: Tomascovic et al. (2000 ▶); Rajsner et al. (1971 ▶); Metys et al. (1965 ▶). For related structures, see: Sridevi et al. (2011 ▶); Sabari et al. (2011 ▶); Selvakumar et al. (2012 ▶). For ring-puckering parameters, see: Cremer & Pople (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H12ClNOS M = 301.78 Orthorhombic, a = 9.0486 (3) Å b = 9.4105 (3) Å c = 33.4876 (10) Å V = 2851.53 (16) Å3 Z = 8 Mo Kα radiation μ = 0.41 mm−1 T = 293 K 0.23 × 0.21 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.910, T max = 0.941 14850 measured reflections 3099 independent reflections 2382 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.118 S = 1.03 3099 reflections 182 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.45 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812026608/tk5111sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812026608/tk5111Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812026608/tk5111Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12ClNOSF(000) = 1248
Mr = 301.78Dx = 1.406 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 3130 reflections
a = 9.0486 (3) Åθ = 2.4–27.0°
b = 9.4105 (3) ŵ = 0.41 mm1
c = 33.4876 (10) ÅT = 293 K
V = 2851.53 (16) Å3Block, colourless
Z = 80.23 × 0.21 × 0.15 mm
Bruker APEXII CCD diffractometer3099 independent reflections
Radiation source: fine-focus sealed tube2382 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
Detector resolution: 10.0 pixels mm-1θmax = 27.0°, θmin = 2.4°
ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −10→11
Tmin = 0.910, Tmax = 0.941l = −42→29
14850 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.118w = 1/[σ2(Fo2) + (0.0432P)2 + 1.9074P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3099 reflectionsΔρmax = 0.35 e Å3
182 parametersΔρmin = −0.45 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0057 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0719 (3)0.1514 (2)0.12513 (6)0.0476 (5)
H1A0.06550.14660.15280.057*
C20.0392 (2)0.3707 (2)0.07497 (6)0.0435 (5)
C30.0021 (3)0.5128 (3)0.08041 (7)0.0580 (7)
H30.04570.56430.10100.070*
C4−0.0985 (3)0.5777 (3)0.05567 (8)0.0618 (7)
H4−0.12100.67330.05920.074*
C5−0.1654 (3)0.5023 (2)0.02586 (8)0.0518 (6)
H5−0.23350.54660.00920.062*
C6−0.1323 (2)0.3610 (2)0.02049 (7)0.0434 (5)
H6−0.17890.30980.00040.052*
C7−0.0300 (2)0.2947 (2)0.04485 (6)0.0373 (4)
C80.0158 (2)0.0388 (2)0.06027 (6)0.0399 (5)
C90.0015 (2)0.0533 (2)0.10436 (6)0.0416 (5)
C10−0.0895 (3)−0.0641 (3)0.12279 (7)0.0555 (6)
H10A−0.1879−0.06120.11140.067*
H10B−0.0457−0.15470.11560.067*
C11−0.1027 (3)−0.0572 (2)0.16758 (7)0.0489 (6)
C12−0.0147 (3)−0.1404 (3)0.19132 (8)0.0590 (6)
H120.0524−0.20220.17940.071*
C13−0.0233 (3)−0.1346 (3)0.23246 (8)0.0668 (7)
H130.0367−0.19220.24820.080*
C14−0.1208 (3)−0.0436 (3)0.24963 (8)0.0639 (7)
C15−0.2101 (3)0.0408 (3)0.22704 (9)0.0733 (8)
H15−0.27660.10280.23910.088*
C16−0.2004 (3)0.0329 (3)0.18587 (8)0.0664 (7)
H16−0.26140.08990.17030.080*
N10.0078 (2)0.15261 (18)0.03612 (5)0.0405 (4)
H10.02900.13630.01150.049*
O10.0322 (2)−0.08062 (16)0.04596 (4)0.0551 (4)
S10.17684 (7)0.29044 (7)0.104528 (18)0.0568 (2)
Cl1−0.13112 (12)−0.03656 (12)0.30146 (2)0.1046 (4)
U11U22U33U12U13U23
C10.0518 (13)0.0530 (13)0.0379 (11)−0.0069 (11)−0.0027 (10)0.0015 (10)
C20.0495 (13)0.0381 (12)0.0428 (11)−0.0122 (10)0.0066 (9)−0.0021 (9)
C30.0789 (18)0.0400 (13)0.0552 (14)−0.0191 (13)0.0111 (13)−0.0109 (11)
C40.0796 (19)0.0336 (12)0.0721 (17)0.0004 (12)0.0225 (15)−0.0012 (12)
C50.0508 (14)0.0379 (12)0.0667 (15)0.0020 (11)0.0135 (12)0.0109 (11)
C60.0418 (11)0.0363 (12)0.0522 (12)−0.0045 (9)0.0039 (10)0.0036 (9)
C70.0389 (11)0.0328 (10)0.0400 (10)−0.0049 (9)0.0067 (8)−0.0009 (8)
C80.0440 (12)0.0361 (12)0.0396 (10)0.0032 (9)−0.0035 (9)−0.0018 (9)
C90.0469 (12)0.0398 (12)0.0380 (10)0.0010 (10)−0.0028 (9)0.0018 (9)
C100.0696 (16)0.0478 (13)0.0492 (13)−0.0110 (12)−0.0046 (12)0.0040 (11)
C110.0515 (14)0.0455 (13)0.0497 (12)−0.0084 (11)−0.0005 (10)0.0095 (10)
C120.0615 (16)0.0559 (15)0.0595 (14)0.0044 (13)−0.0010 (12)0.0090 (12)
C130.0687 (18)0.0723 (18)0.0593 (15)−0.0046 (15)−0.0117 (14)0.0210 (14)
C140.0653 (17)0.0791 (18)0.0472 (13)−0.0228 (15)0.0080 (12)0.0081 (13)
C150.0719 (19)0.078 (2)0.0698 (17)0.0061 (16)0.0219 (15)0.0040 (15)
C160.0631 (17)0.0714 (18)0.0645 (16)0.0115 (14)0.0025 (13)0.0179 (14)
N10.0527 (11)0.0347 (9)0.0342 (8)0.0024 (8)0.0011 (8)−0.0025 (7)
O10.0836 (12)0.0365 (8)0.0453 (8)0.0120 (8)−0.0058 (8)−0.0030 (7)
S10.0541 (4)0.0654 (4)0.0509 (3)−0.0224 (3)−0.0093 (3)0.0030 (3)
Cl10.1122 (7)0.1522 (9)0.0494 (4)−0.0371 (7)0.0121 (4)0.0051 (5)
C1—C91.320 (3)C8—C91.488 (3)
C1—S11.758 (2)C9—C101.509 (3)
C1—H1A0.9300C10—C111.506 (3)
C2—C71.386 (3)C10—H10A0.9700
C2—C31.391 (3)C10—H10B0.9700
C2—S11.761 (2)C11—C161.370 (4)
C3—C41.374 (4)C11—C121.371 (3)
C3—H30.9300C12—C131.381 (4)
C4—C51.366 (4)C12—H120.9300
C4—H40.9300C13—C141.357 (4)
C5—C61.374 (3)C13—H130.9300
C5—H50.9300C14—C151.363 (4)
C6—C71.382 (3)C14—Cl11.739 (3)
C6—H60.9300C15—C161.383 (4)
C7—N11.411 (3)C15—H150.9300
C8—O11.231 (2)C16—H160.9300
C8—N11.344 (3)N1—H10.8600
C9—C1—S1125.10 (17)C11—C10—H10A108.6
C9—C1—H1A117.5C9—C10—H10A108.6
S1—C1—H1A117.5C11—C10—H10B108.6
C7—C2—C3118.8 (2)C9—C10—H10B108.6
C7—C2—S1120.49 (17)H10A—C10—H10B107.6
C3—C2—S1120.64 (18)C16—C11—C12118.0 (2)
C4—C3—C2120.6 (2)C16—C11—C10121.6 (2)
C4—C3—H3119.7C12—C11—C10120.5 (2)
C2—C3—H3119.7C11—C12—C13121.5 (3)
C5—C4—C3120.2 (2)C11—C12—H12119.2
C5—C4—H4119.9C13—C12—H12119.2
C3—C4—H4119.9C14—C13—C12119.0 (3)
C4—C5—C6120.1 (2)C14—C13—H13120.5
C4—C5—H5120.0C12—C13—H13120.5
C6—C5—H5120.0C13—C14—C15121.2 (3)
C5—C6—C7120.4 (2)C13—C14—Cl1118.8 (2)
C5—C6—H6119.8C15—C14—Cl1120.0 (2)
C7—C6—H6119.8C14—C15—C16118.9 (3)
C6—C7—C2119.92 (19)C14—C15—H15120.5
C6—C7—N1117.91 (18)C16—C15—H15120.5
C2—C7—N1122.02 (19)C11—C16—C15121.3 (3)
O1—C8—N1119.98 (18)C11—C16—H16119.3
O1—C8—C9118.70 (18)C15—C16—H16119.3
N1—C8—C9121.31 (18)C8—N1—C7130.05 (17)
C1—C9—C8123.0 (2)C8—N1—H1115.0
C1—C9—C10124.05 (19)C7—N1—H1115.0
C8—C9—C10112.71 (18)C1—S1—C299.08 (10)
C11—C10—C9114.76 (19)
C7—C2—C3—C4−1.7 (3)C9—C10—C11—C1679.7 (3)
S1—C2—C3—C4175.82 (19)C9—C10—C11—C12−99.3 (3)
C2—C3—C4—C51.3 (4)C16—C11—C12—C130.1 (4)
C3—C4—C5—C60.0 (4)C10—C11—C12—C13179.1 (2)
C4—C5—C6—C7−0.7 (3)C11—C12—C13—C14−0.4 (4)
C5—C6—C7—C20.2 (3)C12—C13—C14—C150.4 (4)
C5—C6—C7—N1−175.39 (19)C12—C13—C14—Cl1−179.9 (2)
C3—C2—C7—C61.0 (3)C13—C14—C15—C160.0 (4)
S1—C2—C7—C6−176.59 (15)Cl1—C14—C15—C16−179.7 (2)
C3—C2—C7—N1176.41 (19)C12—C11—C16—C150.3 (4)
S1—C2—C7—N1−1.2 (3)C10—C11—C16—C15−178.7 (2)
S1—C1—C9—C86.9 (3)C14—C15—C16—C11−0.3 (4)
S1—C1—C9—C10−179.25 (19)O1—C8—N1—C7170.5 (2)
O1—C8—C9—C1135.4 (2)C9—C8—N1—C7−8.1 (3)
N1—C8—C9—C1−46.0 (3)C6—C7—N1—C8−131.7 (2)
O1—C8—C9—C10−39.0 (3)C2—C7—N1—C852.8 (3)
N1—C8—C9—C10139.5 (2)C9—C1—S1—C258.0 (2)
C1—C9—C10—C113.5 (3)C7—C2—S1—C1−60.21 (19)
C8—C9—C10—C11177.9 (2)C3—C2—S1—C1122.26 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.862.072.854 (2)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O1i 0.862.072.854 (2)151

Symmetry code: (i) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  [Derivative of 4,9-dihydrothieno(2,3-b)benzo(e)thiepine--a new type of effective antihistaminic].

Authors:  J Metys; J Metysová
Journal:  Acta Biol Med Ger       Date:  1965

3.  3-(2-Methyl-benzyl-idene)-2,3-dihydro-1,5-benzothia-zepin-4(5H)-one.

Authors:  D Sridevi; Sundari Bhaskaran; G Usha; G Murugan; M Bakthadoss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-08

4.  3-[(Z)-Benzyl-idene]-2,3-dihydro-1,5-benzothia-zepin-4(5H)-one.

Authors:  V Sabari; G Jagadeesan; Raman Selvakumar; Mannickam Bakthadoss; S Aravindhan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29

5.  (Z)-3-(2-Meth-oxy-benz-yl)-1,5-benzo-thia-zepin-4(5H)-one.

Authors:  R Selvakumar; M Bakthadoss; D Lakshmanan; S Murugavel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-16

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  2 in total

1.  Crystal structure of (Z)-3-(4-meth-oxy-benzyl-idene)-2,3-di-hydro-benzo[b][1,4]thia-zepin-4(5H)-one.

Authors:  V Vinayagam; J Mohan Raj; S Murugavel; R Selvakumar; M Bakthadoss
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-01

2.  (Z)-3-(3,4-Dimeth-oxy-benzyl-idene)-2,3-dihydro-1,5-benzothia-zepin-4(5H)-one.

Authors:  M Bakthadoss; R Selvakumar; N Manikandan; S Murugavel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-23
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.