Literature DB >> 23723861

(Z)-3-(3,4-Di-meth-oxy-benz-yl)-1,5-benzo-thia-zepin-4(5H)-one.

R Selvakumar1, M Bakthadoss, S Vijayakumar, S Murugavel.   

Abstract

In the title compound, C18H17NO3S, the thia-zepine ring adopts a slightly distorted twist-boat conformation. The dihedral angle between the mean plane of the benzo-thia-zepin ring system and the benzene ring is 60.3 (1)°. In the crystal, mol-ecules are linked by two pairs of inversion-related N-H⋯O and C-H⋯O hydrogen bonds, generating alternating R 2 (2)(8) and R 2 (2)(6) ring motifs, respectively, in a zigzag supra-molecular chain that runs along the c axis. These chains stack along the a axis via S⋯C [3.424 (2) Å] contacts. A three-dimensional supra-molecular network is consolidated by C-H⋯π and π-π inter-actions [inter-centroid distance between di-meth-oxy-benzene rings = 3.815 (1) Å]. The crystal studied was a non-merohedral twin, with a refined value of the minor twin fraction of 0.2477 (6) .

Entities:  

Year:  2013        PMID: 23723861      PMCID: PMC3648241          DOI: 10.1107/S1600536813009598

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biology of thia­zepine derivatives and for a related structure, see: Bakthadoss et al. (2013 ▶). For ring-puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C18H17NO3S M = 327.39 Orthorhombic, a = 19.966 (4) Å b = 10.355 (2) Å c = 15.536 (3) Å V = 3212.0 (11) Å3 Z = 8 Mo Kα radiation μ = 0.22 mm−1 T = 293 K 0.35 × 0.20 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (TWINABS; Sheldrick, 1997 ▶) T min = 0.927, T max = 0.968 13227 measured reflections 13227 independent reflections 8413 reflections with I > 2σ(I) R int = 0.066

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.175 S = 1.02 13227 reflections 211 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813009598/tk5214sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813009598/tk5214Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813009598/tk5214Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H17NO3SF(000) = 1376
Mr = 327.39Dx = 1.354 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 2790 reflections
a = 19.966 (4) Åθ = 2.2–24.9°
b = 10.355 (2) ŵ = 0.22 mm1
c = 15.536 (3) ÅT = 293 K
V = 3212.0 (11) Å3Block, colourless
Z = 80.35 × 0.20 × 0.15 mm
Bruker APEXII CCD diffractometer13227 independent reflections
Radiation source: fine-focus sealed tube8413 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.066
Detector resolution: 10.0 pixels mm-1θmax = 24.9°, θmin = 2.2°
ω scansh = −23→23
Absorption correction: multi-scan (TWINABS; Sheldrick, 1997)k = −12→9
Tmin = 0.927, Tmax = 0.968l = −18→18
13227 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.175H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0582P)2] where P = (Fo2 + 2Fc2)/3
13227 reflections(Δ/σ)max = 0.001
211 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C20.21158 (10)0.01584 (18)1.02679 (11)0.0320 (5)
C30.26554 (10)0.0619 (2)1.07376 (13)0.0401 (5)
H30.30720.02251.06830.048*
C40.25791 (10)0.1650 (2)1.12822 (13)0.0434 (6)
H40.29390.19351.16110.052*
C50.19688 (11)0.2264 (2)1.13416 (12)0.0405 (5)
H50.19210.29781.17000.049*
C60.14302 (10)0.18270 (19)1.08740 (11)0.0339 (5)
H60.10200.22491.09130.041*
C70.14978 (9)0.07580 (18)1.03449 (10)0.0265 (4)
C80.07914 (10)−0.00895 (17)0.91369 (11)0.0300 (5)
C90.13353 (9)−0.00907 (17)0.84820 (11)0.0277 (5)
C10.19328 (11)−0.05969 (19)0.86307 (11)0.0359 (5)
H10.2230−0.06220.81700.043*
C100.11450 (10)0.04089 (18)0.76116 (11)0.0332 (5)
H10A0.0735−0.00160.74320.040*
H10B0.14930.01700.72060.040*
C110.10408 (8)0.18544 (17)0.75624 (10)0.0267 (4)
C120.12408 (10)0.2698 (2)0.81859 (11)0.0369 (5)
H120.14400.23840.86850.044*
C130.11523 (10)0.4015 (2)0.80865 (12)0.0406 (5)
H130.12860.45740.85220.049*
C140.08704 (10)0.45013 (18)0.73534 (12)0.0345 (5)
C150.06728 (9)0.36546 (19)0.67025 (11)0.0305 (5)
C160.07503 (9)0.23488 (19)0.68158 (10)0.0298 (5)
H160.06070.17850.63880.036*
C180.02274 (13)0.3361 (2)0.52964 (13)0.0661 (8)
H18A0.06160.29020.50990.099*
H18B0.00420.38520.48300.099*
H18C−0.01000.27560.55020.099*
C170.08134 (13)0.6638 (2)0.78994 (14)0.0715 (8)
H17A0.05360.63250.83590.107*
H17B0.06650.74830.77300.107*
H17C0.12700.66840.80910.107*
N10.09093 (8)0.02648 (15)0.99504 (9)0.0325 (4)
H1A0.05730.01801.02910.039*
O10.02201 (7)−0.04165 (14)0.89186 (8)0.0423 (4)
O30.04118 (7)0.42072 (13)0.59744 (8)0.0462 (4)
O20.07680 (8)0.57865 (13)0.71876 (9)0.0498 (4)
S10.22192 (3)−0.12256 (6)0.96130 (3)0.04692 (18)
U11U22U33U12U13U23
C20.0340 (13)0.0353 (12)0.0267 (10)0.0018 (10)−0.0032 (9)0.0069 (9)
C30.0285 (13)0.0482 (15)0.0437 (12)0.0032 (10)−0.0051 (9)0.0068 (11)
C40.0369 (15)0.0530 (15)0.0404 (12)−0.0140 (12)−0.0120 (10)0.0064 (11)
C50.0447 (14)0.0402 (13)0.0366 (11)−0.0090 (11)−0.0044 (10)−0.0018 (10)
C60.0347 (13)0.0359 (13)0.0311 (10)−0.0005 (10)0.0000 (9)0.0014 (9)
C70.0256 (12)0.0326 (12)0.0214 (9)−0.0028 (9)−0.0011 (8)0.0067 (9)
C80.0302 (13)0.0278 (12)0.0320 (10)0.0017 (9)−0.0025 (9)0.0044 (9)
C90.0310 (12)0.0249 (11)0.0271 (9)0.0008 (9)−0.0016 (8)−0.0015 (8)
C10.0391 (14)0.0386 (13)0.0300 (10)0.0034 (10)0.0048 (9)−0.0031 (9)
C100.0394 (13)0.0351 (12)0.0252 (9)−0.0004 (9)0.0006 (8)−0.0022 (9)
C110.0263 (12)0.0297 (11)0.0242 (9)−0.0046 (9)0.0029 (8)0.0008 (9)
C120.0463 (14)0.0395 (13)0.0248 (10)−0.0052 (11)−0.0030 (9)−0.0008 (9)
C130.0524 (15)0.0357 (14)0.0336 (11)−0.0129 (11)0.0002 (10)−0.0083 (10)
C140.0406 (14)0.0246 (12)0.0384 (11)−0.0057 (9)0.0126 (10)−0.0006 (10)
C150.0324 (13)0.0324 (12)0.0265 (10)0.0009 (9)0.0052 (8)0.0046 (9)
C160.0319 (13)0.0310 (12)0.0263 (10)−0.0039 (9)0.0006 (8)−0.0034 (9)
C180.111 (2)0.0510 (16)0.0358 (13)0.0186 (15)−0.0196 (13)−0.0014 (11)
C170.118 (2)0.0342 (15)0.0621 (16)−0.0121 (15)0.0208 (15)−0.0165 (13)
N10.0229 (10)0.0474 (11)0.0273 (8)−0.0062 (8)0.0031 (7)0.0024 (8)
O10.0294 (9)0.0628 (10)0.0346 (7)−0.0108 (7)−0.0031 (6)−0.0053 (7)
O30.0675 (11)0.0373 (9)0.0338 (8)0.0099 (7)−0.0051 (7)0.0047 (7)
O20.0797 (12)0.0244 (8)0.0452 (8)−0.0014 (8)0.0113 (8)−0.0036 (7)
S10.0543 (4)0.0454 (4)0.0411 (3)0.0223 (3)−0.0086 (3)0.0000 (3)
C2—C31.386 (3)C10—H10B0.9700
C2—C71.386 (2)C11—C121.364 (2)
C2—S11.770 (2)C11—C161.394 (2)
C3—C41.371 (3)C12—C131.383 (3)
C3—H30.9300C12—H120.9300
C4—C51.377 (3)C13—C141.367 (3)
C4—H40.9300C13—H130.9300
C5—C61.374 (3)C14—O21.371 (2)
C5—H50.9300C14—C151.395 (3)
C6—C71.385 (3)C15—O31.370 (2)
C6—H60.9300C15—C161.372 (3)
C7—N11.420 (2)C16—H160.9300
C8—O11.237 (2)C18—O31.419 (2)
C8—N11.337 (2)C18—H18A0.9600
C8—C91.488 (3)C18—H18B0.9600
C9—C11.323 (3)C18—H18C0.9600
C9—C101.497 (2)C17—O21.417 (2)
C1—S11.7549 (19)C17—H17A0.9600
C1—H10.9300C17—H17B0.9600
C10—C111.513 (2)C17—H17C0.9600
C10—H10A0.9700N1—H1A0.8600
C3—C2—C7119.50 (18)C16—C11—C10117.55 (16)
C3—C2—S1119.38 (16)C11—C12—C13120.97 (18)
C7—C2—S1121.07 (14)C11—C12—H12119.5
C4—C3—C2120.44 (19)C13—C12—H12119.5
C4—C3—H3119.8C14—C13—C12120.58 (18)
C2—C3—H3119.8C14—C13—H13119.7
C3—C4—C5119.93 (19)C12—C13—H13119.7
C3—C4—H4120.0C13—C14—O2125.16 (17)
C5—C4—H4120.0C13—C14—C15119.27 (18)
C6—C5—C4120.3 (2)O2—C14—C15115.57 (17)
C6—C5—H5119.8O3—C15—C16124.07 (17)
C4—C5—H5119.8O3—C15—C14116.31 (17)
C5—C6—C7120.03 (19)C16—C15—C14119.61 (17)
C5—C6—H6120.0C15—C16—C11121.03 (17)
C7—C6—H6120.0C15—C16—H16119.5
C6—C7—C2119.72 (17)C11—C16—H16119.5
C6—C7—N1117.57 (17)O3—C18—H18A109.5
C2—C7—N1122.54 (17)O3—C18—H18B109.5
O1—C8—N1119.77 (17)H18A—C18—H18B109.5
O1—C8—C9119.02 (17)O3—C18—H18C109.5
N1—C8—C9121.21 (18)H18A—C18—H18C109.5
C1—C9—C8122.60 (17)H18B—C18—H18C109.5
C1—C9—C10121.56 (17)O2—C17—H17A109.5
C8—C9—C10115.60 (16)O2—C17—H17B109.5
C9—C1—S1126.33 (15)H17A—C17—H17B109.5
C9—C1—H1116.8O2—C17—H17C109.5
S1—C1—H1116.8H17A—C17—H17C109.5
C9—C10—C11114.99 (15)H17B—C17—H17C109.5
C9—C10—H10A108.5C8—N1—C7130.72 (16)
C11—C10—H10A108.5C8—N1—H1A114.6
C9—C10—H10B108.5C7—N1—H1A114.6
C11—C10—H10B108.5C15—O3—C18116.96 (16)
H10A—C10—H10B107.5C14—O2—C17116.60 (16)
C12—C11—C16118.50 (17)C1—S1—C299.30 (9)
C12—C11—C10123.88 (16)
C7—C2—C3—C40.7 (3)C11—C12—C13—C14−1.0 (3)
S1—C2—C3—C4−176.75 (15)C12—C13—C14—O2−179.20 (17)
C2—C3—C4—C5−2.3 (3)C12—C13—C14—C15−0.1 (3)
C3—C4—C5—C61.7 (3)C13—C14—C15—O3−178.15 (17)
C4—C5—C6—C70.5 (3)O2—C14—C15—O31.0 (2)
C5—C6—C7—C2−2.1 (3)C13—C14—C15—C161.5 (3)
C5—C6—C7—N1173.30 (16)O2—C14—C15—C16−179.36 (16)
C3—C2—C7—C61.5 (3)O3—C15—C16—C11177.80 (17)
S1—C2—C7—C6178.92 (13)C14—C15—C16—C11−1.8 (3)
C3—C2—C7—N1−173.68 (16)C12—C11—C16—C150.7 (3)
S1—C2—C7—N13.7 (2)C10—C11—C16—C15−176.41 (16)
O1—C8—C9—C1−133.7 (2)O1—C8—N1—C7−175.13 (18)
N1—C8—C9—C146.7 (3)C9—C8—N1—C74.5 (3)
O1—C8—C9—C1040.8 (2)C6—C7—N1—C8133.3 (2)
N1—C8—C9—C10−138.76 (18)C2—C7—N1—C8−51.4 (3)
C8—C9—C1—S1−5.3 (3)C16—C15—O3—C18−1.4 (3)
C10—C9—C1—S1−179.56 (14)C14—C15—O3—C18178.15 (18)
C1—C9—C10—C11−113.1 (2)C13—C14—O2—C17−15.3 (3)
C8—C9—C10—C1172.2 (2)C15—C14—O2—C17165.61 (18)
C9—C10—C11—C1214.1 (3)C9—C1—S1—C2−58.0 (2)
C9—C10—C11—C16−168.94 (16)C3—C2—S1—C1−125.91 (16)
C16—C11—C12—C130.7 (3)C7—C2—S1—C156.68 (17)
C10—C11—C12—C13177.59 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.862.022.863 (2)167
C18—H18B···O3ii0.962.533.445 (3)159
C4—H4···Cg1iii0.932.573.450 (2)158
C10—H10B···Cg2iv0.972.823.725 (2)155
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C11–C16 and C2–C7 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O1i 0.862.022.863 (2)167
C18—H18B⋯O3ii 0.962.533.445 (3)159
C4—H4⋯Cg1iii 0.932.573.450 (2)158
C10—H10BCg2iv 0.972.823.725 (2)155

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (Z)-3-(3,4-Dimeth-oxy-benzyl-idene)-2,3-dihydro-1,5-benzothia-zepin-4(5H)-one.

Authors:  M Bakthadoss; R Selvakumar; N Manikandan; S Murugavel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-23

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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