Literature DB >> 23634101

(Z)-3-(2,4-Dichloro-benz-yl)-1,5-benzo-thia-zepin-4(5H)-one.

S Murugavel1, N Manikandan, R Selvakumar, M Bakthadoss.   

Abstract

In the title compound, C16H11Cl2NOS, the seven-membered thia-zepine ring adopts a distorted twist-boat conformation. The dihedral angle between the mean plane of the benzothia-zepine ring system and the benzene ring is 78.6 (1)°. The mol-ecular conformation is stabilized by a weak intra-molecular C-H⋯Cl hydrogen bond, which generates an S(5) ring motif. In the crystal, pairs of N-H⋯O hydrogen bonds link inversion-related mol-ecules into dimers, generating R 2 (2)(8) ring motifs. The crystal packing also features alternating π-π inter-actions between benzothia-zepine benzene rings [inter-centroid distance = 3.740 (3) Å] and dichloro-benzene rings [inter-centroid distance = 3.882 (3) Å] to consolidate a three-dimensional architecture.

Entities:  

Year:  2013        PMID: 23634101      PMCID: PMC3629614          DOI: 10.1107/S1600536813007435

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biology and related structures of thia­zepin derivatives, see: Bakthadoss et al. (2013 ▶). For ring-puckering parameters, see: Cremer & Pople (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H11Cl2NOS M = 336.22 Triclinic, a = 7.879 (5) Å b = 9.667 (5) Å c = 9.979 (5) Å α = 89.052 (5)° β = 78.161 (4)° γ = 83.647 (5)° V = 739.3 (7) Å3 Z = 2 Mo Kα radiation μ = 0.58 mm−1 T = 293 K 0.24 × 0.21 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.871, T max = 0.917 18415 measured reflections 5225 independent reflections 4013 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.123 S = 1.04 5225 reflections 190 parameters H-atom parameters constrained Δρmax = 0.55 e Å−3 Δρmin = −0.44 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813007435/tk5208sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813007435/tk5208Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813007435/tk5208Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H11Cl2NOSZ = 2
Mr = 336.22F(000) = 344
Triclinic, P1Dx = 1.510 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.879 (5) ÅCell parameters from 5914 reflections
b = 9.667 (5) Åθ = 2.1–33.7°
c = 9.979 (5) ŵ = 0.58 mm1
α = 89.052 (5)°T = 293 K
β = 78.161 (4)°Block, colourless
γ = 83.647 (5)°0.24 × 0.21 × 0.15 mm
V = 739.3 (7) Å3
Bruker APEXII CCD diffractometer5225 independent reflections
Radiation source: fine-focus sealed tube4013 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
Detector resolution: 10.0 pixels mm-1θmax = 33.7°, θmin = 2.1°
ω scansh = −12→11
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −14→14
Tmin = 0.871, Tmax = 0.917l = −14→15
18415 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0583P)2 + 0.2157P] where P = (Fo2 + 2Fc2)/3
5225 reflections(Δ/σ)max = 0.001
190 parametersΔρmax = 0.55 e Å3
0 restraintsΔρmin = −0.44 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.53450 (18)0.28937 (15)0.94205 (15)0.0366 (3)
H10.45460.26730.89110.044*
C20.6952 (2)0.14986 (15)1.12880 (14)0.0371 (3)
C30.6971 (3)0.01550 (17)1.18247 (17)0.0510 (4)
H30.5951−0.02771.19960.061*
C40.8473 (3)−0.05324 (19)1.21016 (19)0.0622 (5)
H40.8466−0.14241.24670.075*
C50.9993 (3)0.0092 (2)1.18406 (19)0.0600 (5)
H51.1010−0.03741.20380.072*
C61.0008 (2)0.14161 (19)1.12835 (17)0.0469 (3)
H61.10370.18361.11060.056*
C70.84959 (19)0.21138 (14)1.09904 (14)0.0352 (3)
C80.79730 (18)0.41136 (14)0.94238 (15)0.0349 (3)
C90.66727 (17)0.35381 (13)0.87569 (14)0.0321 (2)
C100.6884 (2)0.39317 (17)0.72620 (15)0.0423 (3)
H10A0.69680.49240.71860.051*
H10B0.79780.34600.67670.051*
C110.5449 (2)0.35964 (15)0.65712 (14)0.0371 (3)
C120.55727 (19)0.24270 (15)0.57559 (15)0.0359 (3)
C130.42879 (19)0.21821 (15)0.50589 (15)0.0388 (3)
H130.44190.14020.44990.047*
C140.28122 (19)0.31163 (16)0.52118 (14)0.0390 (3)
C150.2600 (2)0.42737 (18)0.60401 (18)0.0477 (4)
H150.15830.48860.61580.057*
C160.3933 (2)0.45071 (17)0.66928 (17)0.0469 (4)
H160.38080.53020.72320.056*
N10.85975 (16)0.34776 (12)1.04633 (13)0.0375 (3)
H1A0.91550.39901.08790.045*
O10.84965 (17)0.52292 (12)0.89978 (14)0.0545 (3)
Cl10.73749 (6)0.11906 (5)0.55837 (6)0.06427 (15)
Cl20.11969 (6)0.27905 (6)0.43563 (5)0.05837 (14)
S10.49323 (5)0.24136 (4)1.11466 (4)0.04389 (11)
U11U22U33U12U13U23
C10.0354 (7)0.0435 (7)0.0355 (7)−0.0151 (5)−0.0122 (5)0.0003 (5)
C20.0443 (7)0.0377 (6)0.0304 (6)−0.0118 (5)−0.0059 (5)0.0013 (5)
C30.0692 (11)0.0425 (8)0.0405 (8)−0.0178 (8)−0.0032 (7)0.0067 (6)
C40.0933 (16)0.0444 (9)0.0444 (9)−0.0023 (9)−0.0077 (9)0.0139 (7)
C50.0720 (13)0.0603 (11)0.0463 (9)0.0113 (9)−0.0196 (9)0.0086 (8)
C60.0460 (8)0.0559 (9)0.0417 (8)−0.0047 (7)−0.0169 (7)0.0046 (7)
C70.0413 (7)0.0372 (6)0.0298 (6)−0.0090 (5)−0.0111 (5)0.0016 (5)
C80.0351 (6)0.0342 (6)0.0405 (7)−0.0127 (5)−0.0153 (5)0.0023 (5)
C90.0344 (6)0.0322 (6)0.0339 (6)−0.0106 (5)−0.0129 (5)−0.0001 (5)
C100.0475 (8)0.0506 (8)0.0355 (7)−0.0246 (7)−0.0142 (6)0.0037 (6)
C110.0453 (7)0.0411 (7)0.0295 (6)−0.0162 (6)−0.0121 (5)0.0028 (5)
C120.0359 (7)0.0376 (6)0.0369 (7)−0.0105 (5)−0.0103 (5)0.0015 (5)
C130.0416 (7)0.0419 (7)0.0367 (7)−0.0144 (6)−0.0114 (6)−0.0024 (5)
C140.0392 (7)0.0492 (8)0.0328 (6)−0.0151 (6)−0.0121 (5)0.0086 (5)
C150.0457 (8)0.0507 (9)0.0466 (8)0.0005 (7)−0.0122 (7)−0.0001 (7)
C160.0563 (10)0.0449 (8)0.0416 (8)−0.0057 (7)−0.0144 (7)−0.0072 (6)
N10.0406 (6)0.0388 (6)0.0405 (6)−0.0169 (5)−0.0194 (5)0.0046 (5)
O10.0638 (8)0.0471 (6)0.0703 (8)−0.0323 (6)−0.0422 (6)0.0212 (5)
Cl10.0451 (2)0.0557 (3)0.0965 (4)0.00095 (18)−0.0269 (2)−0.0159 (2)
Cl20.0465 (2)0.0776 (3)0.0608 (3)−0.0192 (2)−0.0275 (2)0.0075 (2)
S10.03570 (19)0.0574 (2)0.0392 (2)−0.01553 (16)−0.00402 (14)0.00582 (15)
C1—C91.3294 (19)C8—C91.4901 (18)
C1—S11.7508 (17)C9—C101.514 (2)
C1—H10.9300C10—C111.505 (2)
C2—C71.388 (2)C10—H10A0.9700
C2—C31.396 (2)C10—H10B0.9700
C2—S11.7642 (18)C11—C121.387 (2)
C3—C41.368 (3)C11—C161.389 (2)
C3—H30.9300C12—C131.383 (2)
C4—C51.376 (3)C12—Cl11.7336 (17)
C4—H40.9300C13—C141.375 (2)
C5—C61.387 (3)C13—H130.9300
C5—H50.9300C14—C151.377 (2)
C6—C71.385 (2)C14—Cl21.7295 (16)
C6—H60.9300C15—C161.384 (2)
C7—N11.4158 (19)C15—H150.9300
C8—O11.2350 (17)C16—H160.9300
C8—N11.3481 (19)N1—H1A0.8600
C9—C1—S1127.26 (11)C11—C10—H10A108.3
C9—C1—H1116.4C9—C10—H10A108.3
S1—C1—H1116.4C11—C10—H10B108.3
C7—C2—C3119.11 (15)C9—C10—H10B108.3
C7—C2—S1121.99 (12)H10A—C10—H10B107.4
C3—C2—S1118.67 (13)C12—C11—C16116.63 (14)
C4—C3—C2120.73 (17)C12—C11—C10123.35 (15)
C4—C3—H3119.6C16—C11—C10119.97 (14)
C2—C3—H3119.6C13—C12—C11122.51 (14)
C3—C4—C5120.14 (17)C13—C12—Cl1117.07 (12)
C3—C4—H4119.9C11—C12—Cl1120.42 (12)
C5—C4—H4119.9C14—C13—C12118.59 (14)
C4—C5—C6119.97 (18)C14—C13—H13120.7
C4—C5—H5120.0C12—C13—H13120.7
C6—C5—H5120.0C13—C14—C15121.28 (14)
C7—C6—C5120.20 (17)C13—C14—Cl2118.34 (12)
C7—C6—H6119.9C15—C14—Cl2120.38 (13)
C5—C6—H6119.9C14—C15—C16118.61 (16)
C6—C7—C2119.78 (14)C14—C15—H15120.7
C6—C7—N1117.04 (13)C16—C15—H15120.7
C2—C7—N1123.08 (13)C15—C16—C11122.33 (15)
O1—C8—N1118.83 (12)C15—C16—H16118.8
O1—C8—C9117.93 (12)C11—C16—H16118.8
N1—C8—C9123.23 (12)C8—N1—C7131.25 (11)
C1—C9—C8124.33 (13)C8—N1—H1A114.4
C1—C9—C10122.86 (12)C7—N1—H1A114.4
C8—C9—C10112.36 (11)C1—S1—C2101.45 (7)
C11—C10—C9115.75 (12)
C7—C2—C3—C42.3 (2)C16—C11—C12—C131.8 (2)
S1—C2—C3—C4−172.38 (14)C10—C11—C12—C13−175.75 (13)
C2—C3—C4—C5−0.6 (3)C16—C11—C12—Cl1−177.66 (12)
C3—C4—C5—C6−0.6 (3)C10—C11—C12—Cl14.7 (2)
C4—C5—C6—C70.1 (3)C11—C12—C13—C14−1.8 (2)
C5—C6—C7—C21.6 (2)Cl1—C12—C13—C14177.71 (11)
C5—C6—C7—N1178.10 (15)C12—C13—C14—C15−0.1 (2)
C3—C2—C7—C6−2.8 (2)C12—C13—C14—Cl2−179.09 (11)
S1—C2—C7—C6171.71 (12)C13—C14—C15—C161.9 (2)
C3—C2—C7—N1−179.04 (14)Cl2—C14—C15—C16−179.17 (13)
S1—C2—C7—N1−4.5 (2)C14—C15—C16—C11−1.8 (3)
S1—C1—C9—C8−7.0 (2)C12—C11—C16—C150.0 (2)
S1—C1—C9—C10−178.71 (12)C10—C11—C16—C15177.70 (15)
O1—C8—C9—C1−141.76 (16)O1—C8—N1—C7−167.01 (16)
N1—C8—C9—C138.2 (2)C9—C8—N1—C713.1 (2)
O1—C8—C9—C1030.69 (19)C6—C7—N1—C8135.73 (17)
N1—C8—C9—C10−149.37 (15)C2—C7—N1—C8−47.9 (2)
C1—C9—C10—C112.2 (2)C9—C1—S1—C2−51.65 (16)
C8—C9—C10—C11−170.34 (13)C7—C2—S1—C158.57 (13)
C9—C10—C11—C12−98.99 (18)C3—C2—S1—C1−126.89 (13)
C9—C10—C11—C1683.49 (19)
D—H···AD—HH···AD···AD—H···A
C10—H10B···Cl10.972.643.103 (3)109
N1—H1A···O1i0.862.102.873 (2)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C10—H10B⋯Cl10.972.643.103 (3)109
N1—H1A⋯O1i 0.862.102.873 (2)149

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (Z)-3-(3,4-Dimeth-oxy-benzyl-idene)-2,3-dihydro-1,5-benzothia-zepin-4(5H)-one.

Authors:  M Bakthadoss; R Selvakumar; N Manikandan; S Murugavel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-23

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  1 in total

1.  (Z)-3-(3,4-Dimeth-oxy-benzyl-idene)-2,3-dihydro-1,5-benzothia-zepin-4(5H)-one.

Authors:  M Bakthadoss; R Selvakumar; N Manikandan; S Murugavel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-23
  1 in total

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