Literature DB >> 23723850

3-(4-Methoxybenzyl)-1,5-benzo-thiazepin-4(5H)-one.

R Selvakumar1, M Bakthadoss, S Vijayakumar, S Murugavel.   

Abstract

In the title compound, C17H15NO2S, the thia-zepine ring adopts a slightly distorted twist-boat conformation. The dihedral angle between the mean plane of the benzo-thia-zepin ring system and the benzene ring is 65.7 (1)°. In the crystal, pairs of N-H⋯O hydrogen bonds link inversion-related mol-ecules into dimers, generating R2 (2) (8) ring motifs. These dimers are further linked by C-H⋯π and π-π inter-actions [inter-centroid distance between the benzene rings of the benzo-thia-zepine unit = 3.656 (3) Å] into a three-dimensional supra-molecular network.

Entities:  

Year:  2013        PMID: 23723850      PMCID: PMC3648230          DOI: 10.1107/S1600536813009215

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biology of thia­zepin derivatives and for a related structure, see: Bakthadoss et al. (2013 ▶). For ring-puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C17H15NO2S M = 297.36 Triclinic, a = 7.678 (5) Å b = 9.612 (5) Å c = 10.860 (5) Å α = 77.208 (5)° β = 74.117 (4)° γ = 81.522 (5)° V = 748.5 (7) Å3 Z = 2 Mo Kα radiation μ = 0.22 mm−1 T = 293 K 0.23 × 0.21 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.951, T max = 0.968 18449 measured reflections 5363 independent reflections 3676 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.134 S = 1.05 5363 reflections 191 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) ▶; software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813009215/sj5315sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813009215/sj5315Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813009215/sj5315Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H15NO2SZ = 2
Mr = 297.36F(000) = 312
Triclinic, P1Dx = 1.319 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.678 (5) ÅCell parameters from 5471 reflections
b = 9.612 (5) Åθ = 2.0–32.6°
c = 10.860 (5) ŵ = 0.22 mm1
α = 77.208 (5)°T = 293 K
β = 74.117 (4)°Block, colourless
γ = 81.522 (5)°0.23 × 0.21 × 0.15 mm
V = 748.5 (7) Å3
Bruker APEXII CCD diffractometer5363 independent reflections
Radiation source: fine-focus sealed tube3676 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
Detector resolution: 10.0 pixels mm-1θmax = 32.6°, θmin = 2.0°
ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −14→14
Tmin = 0.951, Tmax = 0.968l = −15→16
18449 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0608P)2 + 0.1157P] where P = (Fo2 + 2Fc2)/3
5363 reflections(Δ/σ)max = 0.002
191 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.42839 (17)0.53284 (13)0.19547 (13)0.0389 (3)
H10.51740.57380.21520.047*
C20.18042 (19)0.35576 (13)0.34697 (13)0.0404 (3)
C30.1350 (2)0.29642 (16)0.47950 (15)0.0552 (4)
H30.22680.25900.52170.066*
C4−0.0434 (3)0.29249 (19)0.54865 (16)0.0639 (5)
H4−0.07200.25110.63680.077*
C5−0.1794 (2)0.34965 (18)0.48779 (16)0.0595 (4)
H5−0.30040.34660.53470.071*
C6−0.1378 (2)0.41157 (16)0.35764 (14)0.0475 (3)
H6−0.23070.45140.31720.057*
C70.04227 (17)0.41513 (13)0.28606 (12)0.0366 (3)
C80.19209 (16)0.56421 (13)0.07296 (12)0.0344 (2)
C90.32623 (15)0.61867 (13)0.12345 (11)0.0336 (2)
C100.34837 (18)0.77722 (14)0.07485 (14)0.0415 (3)
H10A0.37540.7968−0.01960.050*
H10B0.23360.83100.10660.050*
C110.49498 (17)0.83050 (13)0.11561 (13)0.0377 (3)
C120.45462 (19)0.90507 (15)0.21596 (14)0.0452 (3)
H120.33380.92280.26010.054*
C130.5907 (2)0.95475 (16)0.25307 (15)0.0504 (3)
H130.56071.00520.32100.060*
C140.76966 (19)0.92861 (14)0.18852 (15)0.0456 (3)
C150.81273 (19)0.85446 (15)0.08668 (16)0.0497 (3)
H150.93350.83720.04230.060*
C160.67642 (19)0.80638 (15)0.05125 (15)0.0462 (3)
H160.70660.7567−0.01720.055*
C170.8784 (3)1.0769 (2)0.2951 (3)0.0859 (7)
H17A0.80261.15640.26090.129*
H17B0.99071.10940.29530.129*
H17C0.81711.03620.38250.129*
N10.07583 (14)0.47009 (12)0.15072 (10)0.0391 (2)
H1A0.01140.43820.11140.047*
O10.18656 (13)0.60841 (11)−0.04169 (9)0.0456 (2)
O20.91500 (16)0.97189 (13)0.21607 (13)0.0668 (3)
S10.41037 (5)0.34901 (4)0.25677 (4)0.05008 (12)
U11U22U33U12U13U23
C10.0361 (6)0.0382 (6)0.0460 (7)−0.0061 (5)−0.0172 (5)−0.0053 (5)
C20.0500 (7)0.0328 (6)0.0419 (7)−0.0089 (5)−0.0177 (6)−0.0033 (5)
C30.0772 (11)0.0465 (8)0.0470 (8)−0.0166 (7)−0.0288 (8)0.0044 (6)
C40.0900 (13)0.0610 (9)0.0383 (8)−0.0249 (9)−0.0106 (8)0.0002 (7)
C50.0627 (10)0.0624 (9)0.0476 (9)−0.0190 (8)0.0023 (7)−0.0097 (7)
C60.0440 (7)0.0525 (8)0.0460 (8)−0.0094 (6)−0.0091 (6)−0.0090 (6)
C70.0424 (6)0.0363 (6)0.0346 (6)−0.0104 (5)−0.0117 (5)−0.0070 (5)
C80.0328 (6)0.0381 (6)0.0352 (6)−0.0030 (4)−0.0122 (5)−0.0083 (5)
C90.0315 (5)0.0364 (5)0.0351 (6)−0.0053 (4)−0.0111 (5)−0.0064 (4)
C100.0415 (7)0.0381 (6)0.0480 (7)−0.0074 (5)−0.0196 (6)−0.0017 (5)
C110.0377 (6)0.0320 (5)0.0441 (7)−0.0069 (5)−0.0140 (5)−0.0018 (5)
C120.0401 (7)0.0446 (7)0.0500 (8)−0.0056 (5)−0.0076 (6)−0.0108 (6)
C130.0590 (9)0.0453 (7)0.0532 (8)−0.0077 (6)−0.0170 (7)−0.0168 (6)
C140.0458 (7)0.0337 (6)0.0629 (9)−0.0073 (5)−0.0253 (6)−0.0037 (6)
C150.0358 (7)0.0471 (7)0.0667 (10)−0.0037 (5)−0.0121 (6)−0.0132 (7)
C160.0424 (7)0.0462 (7)0.0535 (8)−0.0048 (5)−0.0114 (6)−0.0169 (6)
C170.0936 (15)0.0580 (10)0.138 (2)−0.0058 (10)−0.0690 (14)−0.0361 (12)
N10.0399 (5)0.0479 (6)0.0349 (5)−0.0135 (5)−0.0146 (4)−0.0064 (4)
O10.0453 (5)0.0596 (6)0.0358 (5)−0.0154 (4)−0.0168 (4)−0.0019 (4)
O20.0591 (7)0.0568 (6)0.1027 (10)−0.0091 (5)−0.0422 (7)−0.0231 (6)
S10.0448 (2)0.03683 (18)0.0684 (3)0.00032 (13)−0.02330 (17)−0.00078 (15)
C1—C91.3292 (18)C10—C111.5061 (18)
C1—S11.7565 (15)C10—H10A0.9700
C1—H10.9300C10—H10B0.9700
C2—C71.3881 (19)C11—C121.3758 (19)
C2—C31.392 (2)C11—C161.388 (2)
C2—S11.7688 (17)C12—C131.395 (2)
C3—C41.372 (3)C12—H120.9300
C3—H30.9300C13—C141.375 (2)
C4—C51.370 (3)C13—H130.9300
C4—H40.9300C14—O21.3721 (17)
C5—C61.375 (2)C14—C151.386 (2)
C5—H50.9300C15—C161.378 (2)
C6—C71.389 (2)C15—H150.9300
C6—H60.9300C16—H160.9300
C7—N11.4124 (17)C17—O21.415 (2)
C8—O11.2337 (16)C17—H17A0.9600
C8—N11.3474 (16)C17—H17B0.9600
C8—C91.4935 (16)C17—H17C0.9600
C9—C101.5170 (18)N1—H1A0.8600
C9—C1—S1125.87 (10)C9—C10—H10B108.6
C9—C1—H1117.1H10A—C10—H10B107.6
S1—C1—H1117.1C12—C11—C16117.91 (12)
C7—C2—C3119.01 (14)C12—C11—C10121.68 (12)
C7—C2—S1120.68 (11)C16—C11—C10120.41 (12)
C3—C2—S1120.27 (12)C11—C12—C13121.51 (13)
C4—C3—C2120.83 (15)C11—C12—H12119.2
C4—C3—H3119.6C13—C12—H12119.2
C2—C3—H3119.6C14—C13—C12119.54 (13)
C5—C4—C3119.96 (15)C14—C13—H13120.2
C5—C4—H4120.0C12—C13—H13120.2
C3—C4—H4120.0O2—C14—C13124.88 (14)
C4—C5—C6120.22 (16)O2—C14—C15115.39 (13)
C4—C5—H5119.9C13—C14—C15119.73 (12)
C6—C5—H5119.9C16—C15—C14119.91 (13)
C5—C6—C7120.46 (15)C16—C15—H15120.0
C5—C6—H6119.8C14—C15—H15120.0
C7—C6—H6119.8C15—C16—C11121.40 (13)
C2—C7—C6119.49 (13)C15—C16—H16119.3
C2—C7—N1122.61 (12)C11—C16—H16119.3
C6—C7—N1117.72 (12)O2—C17—H17A109.5
O1—C8—N1119.75 (10)O2—C17—H17B109.5
O1—C8—C9118.99 (11)H17A—C17—H17B109.5
N1—C8—C9121.26 (11)O2—C17—H17C109.5
C1—C9—C8122.57 (11)H17A—C17—H17C109.5
C1—C9—C10122.99 (11)H17B—C17—H17C109.5
C8—C9—C10114.20 (10)C8—N1—C7130.70 (10)
C11—C10—C9114.61 (10)C8—N1—H1A114.6
C11—C10—H10A108.6C7—N1—H1A114.6
C9—C10—H10A108.6C14—O2—C17117.51 (14)
C11—C10—H10B108.6C1—S1—C299.41 (6)
C7—C2—C3—C41.9 (2)C9—C10—C11—C1678.58 (16)
S1—C2—C3—C4−175.66 (12)C16—C11—C12—C13−0.3 (2)
C2—C3—C4—C5−1.1 (2)C10—C11—C12—C13−179.73 (13)
C3—C4—C5—C6−0.3 (3)C11—C12—C13—C14−0.2 (2)
C4—C5—C6—C70.9 (2)C12—C13—C14—O2180.00 (14)
C3—C2—C7—C6−1.28 (18)C12—C13—C14—C150.6 (2)
S1—C2—C7—C6176.27 (10)O2—C14—C15—C16−179.96 (13)
C3—C2—C7—N1−176.30 (11)C13—C14—C15—C16−0.5 (2)
S1—C2—C7—N11.25 (16)C14—C15—C16—C110.0 (2)
C5—C6—C7—C2−0.1 (2)C12—C11—C16—C150.4 (2)
C5—C6—C7—N1175.17 (12)C10—C11—C16—C15179.84 (13)
S1—C1—C9—C8−6.64 (19)O1—C8—N1—C7−172.86 (12)
S1—C1—C9—C10179.39 (10)C9—C8—N1—C76.0 (2)
O1—C8—C9—C1−134.74 (14)C2—C7—N1—C8−51.01 (19)
N1—C8—C9—C146.39 (18)C6—C7—N1—C8133.88 (14)
O1—C8—C9—C1039.71 (16)C13—C14—O2—C17−14.9 (2)
N1—C8—C9—C10−139.16 (12)C15—C14—O2—C17164.55 (16)
C1—C9—C10—C11−0.45 (19)C9—C1—S1—C2−57.47 (14)
C8—C9—C10—C11−174.88 (11)C7—C2—S1—C158.98 (11)
C9—C10—C11—C12−102.00 (15)C3—C2—S1—C1−123.50 (11)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.862.022.860 (2)167
C17—H17B···Cgii0.962.963.561 (3)122
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C3–C7 benzene ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O1i 0.862.022.860 (2)167
C17—H17BCg ii 0.962.963.561 (3)122

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (Z)-3-(3,4-Dimeth-oxy-benzyl-idene)-2,3-dihydro-1,5-benzothia-zepin-4(5H)-one.

Authors:  M Bakthadoss; R Selvakumar; N Manikandan; S Murugavel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-23

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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