Literature DB >> 22135459

Functional reconstitution of human eukaryotic translation initiation factor 3 (eIF3).

Chaomin Sun1, Aleksandar Todorovic, Jordi Querol-Audí, Yun Bai, Nancy Villa, Monica Snyder, John Ashchyan, Christopher S Lewis, Abbey Hartland, Scott Gradia, Christopher S Fraser, Jennifer A Doudna, Eva Nogales, Jamie H D Cate.   

Abstract

Protein fate in higher eukaryotes is controlled by three complexes that share conserved architectural elements: the proteasome, COP9 signalosome, and eukaryotic translation initiation factor 3 (eIF3). Here we reconstitute the 13-subunit human eIF3 in Escherichia coli, revealing its structural core to be the eight subunits with conserved orthologues in the proteasome lid complex and COP9 signalosome. This structural core in eIF3 binds to the small (40S) ribosomal subunit, to translation initiation factors involved in mRNA cap-dependent initiation, and to the hepatitis C viral (HCV) internal ribosome entry site (IRES) RNA. Addition of the remaining eIF3 subunits enables reconstituted eIF3 to assemble intact initiation complexes with the HCV IRES. Negative-stain EM reconstructions of reconstituted eIF3 further reveal how the approximately 400 kDa molecular mass structural core organizes the highly flexible 800 kDa molecular mass eIF3 complex, and mediates translation initiation.

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Year:  2011        PMID: 22135459      PMCID: PMC3251073          DOI: 10.1073/pnas.1116821108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  57 in total

1.  A new vector for high-throughput, ligation-independent cloning encoding a tobacco etch virus protease cleavage site.

Authors:  Lucy Stols; Minyi Gu; Lynda Dieckman; Rosemarie Raffen; Frank R Collart; Mark I Donnelly
Journal:  Protein Expr Purif       Date:  2002-06       Impact factor: 1.650

2.  The yeast eIF3 subunits TIF32/a, NIP1/c, and eIF5 make critical connections with the 40S ribosome in vivo.

Authors:  Leos Valásek; Amy A Mathew; Byung-Sik Shin; Klaus H Nielsen; Béla Szamecz; Alan G Hinnebusch
Journal:  Genes Dev       Date:  2003-03-15       Impact factor: 11.361

3.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

4.  Domains of eIF1A that mediate binding to eIF2, eIF3 and eIF5B and promote ternary complex recruitment in vivo.

Authors:  DeAnne S Olsen; Erin M Savner; Amy Mathew; Fan Zhang; Thanuja Krishnamoorthy; Lon Phan; Alan G Hinnebusch
Journal:  EMBO J       Date:  2003-01-15       Impact factor: 11.598

5.  Mechanism of ribosome recruitment by hepatitis C IRES RNA.

Authors:  J S Kieft; K Zhou; R Jubin; J A Doudna
Journal:  RNA       Date:  2001-02       Impact factor: 4.942

6.  Translation initiation factor eIF4G-1 binds to eIF3 through the eIF3e subunit.

Authors:  Aaron K LeFebvre; Nadejda L Korneeva; Marjan Trutschl; Urska Cvek; Roy D Duzan; Christopher A Bradley; John W B Hershey; Robert E Rhoads
Journal:  J Biol Chem       Date:  2006-06-09       Impact factor: 5.157

7.  The j-subunit of human translation initiation factor eIF3 is required for the stable binding of eIF3 and its subcomplexes to 40 S ribosomal subunits in vitro.

Authors:  Christopher S Fraser; Jennifer Y Lee; Greg L Mayeur; Martin Bushell; Jennifer A Doudna; John W B Hershey
Journal:  J Biol Chem       Date:  2003-12-19       Impact factor: 5.157

8.  Characterization of eIF3k: a newly discovered subunit of mammalian translation initiation factor elF3.

Authors:  Greg L Mayeur; Christopher S Fraser; Franck Peiretti; Karen L Block; John W B Hershey
Journal:  Eur J Biochem       Date:  2003-10

9.  Mammalian translation initiation factor eIF1 functions with eIF1A and eIF3 in the formation of a stable 40 S preinitiation complex.

Authors:  Romit Majumdar; Amitabha Bandyopadhyay; Umadas Maitra
Journal:  J Biol Chem       Date:  2002-12-18       Impact factor: 5.157

10.  Position of eukaryotic initiation factor eIF1 on the 40S ribosomal subunit determined by directed hydroxyl radical probing.

Authors:  Ivan B Lomakin; Victoria G Kolupaeva; Assen Marintchev; Gerhard Wagner; Tatyana V Pestova
Journal:  Genes Dev       Date:  2003-11-04       Impact factor: 11.361

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  59 in total

1.  Structure of a yeast 40S-eIF1-eIF1A-eIF3-eIF3j initiation complex.

Authors:  Christopher H S Aylett; Daniel Boehringer; Jan P Erzberger; Tanja Schaefer; Nenad Ban
Journal:  Nat Struct Mol Biol       Date:  2015-02-09       Impact factor: 15.369

2.  Crystal structure of the human COP9 signalosome.

Authors:  Gondichatnahalli M Lingaraju; Richard D Bunker; Simone Cavadini; Daniel Hess; Ulrich Hassiepen; Martin Renatus; Eric S Fischer; Nicolas H Thomä
Journal:  Nature       Date:  2014-07-16       Impact factor: 49.962

3.  Eukaryotic initiation factor (eIF) 3 mediates Barley Yellow Dwarf Viral mRNA 3'-5' UTR interactions and 40S ribosomal subunit binding to facilitate cap-independent translation.

Authors:  Usha Bhardwaj; Paul Powell; Dixie J Goss
Journal:  Nucleic Acids Res       Date:  2019-07-09       Impact factor: 16.971

Review 4.  Dynamics of IRES-mediated translation.

Authors:  Alex G Johnson; Rosslyn Grosely; Alexey N Petrov; Joseph D Puglisi
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-03-19       Impact factor: 6.237

5.  Maternal Dead-end 1 promotes translation of nanos1 by binding the eIF3 complex.

Authors:  Tristan Aguero; Zhigang Jin; Sandip Chorghade; Auinash Kalsotra; Mary Lou King; Jing Yang
Journal:  Development       Date:  2017-09-04       Impact factor: 6.868

6.  Control of Paip1-eukayrotic translation initiation factor 3 interaction by amino acids through S6 kinase.

Authors:  Yvan Martineau; Xiaoshan Wang; Tommy Alain; Emmanuel Petroulakis; David Shahbazian; Bertrand Fabre; Marie-Pierre Bousquet-Dubouch; Bernard Monsarrat; Stéphane Pyronnet; Nahum Sonenberg
Journal:  Mol Cell Biol       Date:  2014-01-06       Impact factor: 4.272

7.  The Jigsaw Puzzle of mRNA Translation Initiation in Eukaryotes: A Decade of Structures Unraveling the Mechanics of the Process.

Authors:  Yaser Hashem; Joachim Frank
Journal:  Annu Rev Biophys       Date:  2018-03-01       Impact factor: 12.981

Review 8.  Heterogeneity and specialized functions of translation machinery: from genes to organisms.

Authors:  Naomi R Genuth; Maria Barna
Journal:  Nat Rev Genet       Date:  2018-07       Impact factor: 53.242

9.  Human eukaryotic initiation factor 4G (eIF4G) protein binds to eIF3c, -d, and -e to promote mRNA recruitment to the ribosome.

Authors:  Nancy Villa; Angelie Do; John W B Hershey; Christopher S Fraser
Journal:  J Biol Chem       Date:  2013-10-03       Impact factor: 5.157

10.  Maternal separation with early weaning: a rodent model providing novel insights into neglect associated developmental deficits.

Authors:  Becky C Carlyle; Alvaro Duque; Robert R Kitchen; Kelly A Bordner; Daniel Coman; Eliza Doolittle; Xenophonios Papademetris; Fahmeed Hyder; Jane R Taylor; Arthur A Simen
Journal:  Dev Psychopathol       Date:  2012-11
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