Literature DB >> 23603227

Computing health quality measures using Informatics for Integrating Biology and the Bedside.

Jeffrey G Klann1, Shawn N Murphy.   

Abstract

BACKGROUND: The Health Quality Measures Format (HQMF) is a Health Level 7 (HL7) standard for expressing computable Clinical Quality Measures (CQMs). Creating tools to process HQMF queries in clinical databases will become increasingly important as the United States moves forward with its Health Information Technology Strategic Plan to Stages 2 and 3 of the Meaningful Use incentive program (MU2 and MU3). Informatics for Integrating Biology and the Bedside (i2b2) is one of the analytical databases used as part of the Office of the National Coordinator (ONC)'s Query Health platform to move toward this goal.
OBJECTIVE: Our goal is to integrate i2b2 with the Query Health HQMF architecture, to prepare for other HQMF use-cases (such as MU2 and MU3), and to articulate the functional overlap between i2b2 and HQMF. Therefore, we analyze the structure of HQMF, and then we apply this understanding to HQMF computation on the i2b2 clinical analytical database platform. Specifically, we develop a translator between two query languages, HQMF and i2b2, so that the i2b2 platform can compute HQMF queries.
METHODS: We use the HQMF structure of queries for aggregate reporting, which define clinical data elements and the temporal and logical relationships between them. We use the i2b2 XML format, which allows flexible querying of a complex clinical data repository in an easy-to-understand domain-specific language.
RESULTS: The translator can represent nearly any i2b2-XML query as HQMF and execute in i2b2 nearly any HQMF query expressible in i2b2-XML. This translator is part of the freely available reference implementation of the QueryHealth initiative. We analyze limitations of the conversion and find it covers many, but not all, of the complex temporal and logical operators required by quality measures.
CONCLUSIONS: HQMF is an expressive language for defining quality measures, and it will be important to understand and implement for CQM computation, in both meaningful use and population health. However, its current form might allow complexity that is intractable for current database systems (both in terms of implementation and computation). Our translator, which supports the subset of HQMF currently expressible in i2b2-XML, may represent the beginnings of a practical compromise. It is being pilot-tested in two Query Health demonstration projects, and it can be further expanded to balance computational tractability with the advanced features needed by measure developers.

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Year:  2013        PMID: 23603227      PMCID: PMC3636801          DOI: 10.2196/jmir.2493

Source DB:  PubMed          Journal:  J Med Internet Res        ISSN: 1438-8871            Impact factor:   5.428


  7 in total

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2.  The "meaningful use" regulation for electronic health records.

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Journal:  N Engl J Med       Date:  2010-07-13       Impact factor: 91.245

3.  Collecting and sharing data for population health: a new paradigm.

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4.  Launching HITECH.

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Journal:  N Engl J Med       Date:  2009-12-30       Impact factor: 91.245

5.  The Shared Health Research Information Network (SHRINE): a prototype federated query tool for clinical data repositories.

Authors:  Griffin M Weber; Shawn N Murphy; Andrew J McMurry; Douglas Macfadden; Daniel J Nigrin; Susanne Churchill; Isaac S Kohane
Journal:  J Am Med Inform Assoc       Date:  2009-06-30       Impact factor: 4.497

6.  Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2).

Authors:  Shawn N Murphy; Griffin Weber; Michael Mendis; Vivian Gainer; Henry C Chueh; Susanne Churchill; Isaac Kohane
Journal:  J Am Med Inform Assoc       Date:  2010 Mar-Apr       Impact factor: 4.497

7.  Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system.

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  7 in total
  14 in total

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2.  Web services for data warehouses: OMOP and PCORnet on i2b2.

Authors:  Jeffrey G Klann; Lori C Phillips; Christopher Herrick; Matthew A H Joss; Kavishwar B Wagholikar; Shawn N Murphy
Journal:  J Am Med Inform Assoc       Date:  2018-10-01       Impact factor: 4.497

Review 3.  Information technology for clinical, translational and comparative effectiveness research. Findings from the section clinical research informatics.

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4.  A Consensus-Based Approach for Harmonizing the OHDSI Common Data Model with HL7 FHIR.

Authors:  Guoqian Jiang; Richard C Kiefer; Deepak K Sharma; Eric Prud'hommeaux; Harold R Solbrig
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5.  Mission and Sustainability of Informatics for Integrating Biology and the Bedside (i2b2).

Authors:  Shawn Murphy; Adam Wilcox
Journal:  EGEMS (Wash DC)       Date:  2014-09-11

6.  A Modular Architecture for Electronic Health Record-Driven Phenotyping.

Authors:  Luke V Rasmussen; Richard C Kiefer; Huan Mo; Peter Speltz; William K Thompson; Guoqian Jiang; Jennifer A Pacheco; Jie Xu; Qian Zhu; Joshua C Denny; Enid Montague; Jyotishman Pathak
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7.  Scalable Collaborative Infrastructure for a Learning Healthcare System (SCILHS): architecture.

Authors:  Kenneth D Mandl; Isaac S Kohane; Douglas McFadden; Griffin M Weber; Marc Natter; Joshua Mandel; Sebastian Schneeweiss; Sarah Weiler; Jeffrey G Klann; Jonathan Bickel; William G Adams; Yaorong Ge; Xiaobo Zhou; James Perkins; Keith Marsolo; Elmer Bernstam; John Showalter; Alexander Quarshie; Elizabeth Ofili; George Hripcsak; Shawn N Murphy
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8.  Query Health: standards-based, cross-platform population health surveillance.

Authors:  Jeffrey G Klann; Michael D Buck; Jeffrey Brown; Marc Hadley; Richard Elmore; Griffin M Weber; Shawn N Murphy
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10.  A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform.

Authors:  Huan Mo; Guoqian Jiang; Jennifer A Pacheco; Richard Kiefer; Luke V Rasmussen; Jyotishman Pathak; Joshua C Denny; William K Thompson
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