Literature DB >> 29295227

A Consensus-Based Approach for Harmonizing the OHDSI Common Data Model with HL7 FHIR.

Guoqian Jiang1, Richard C Kiefer1, Deepak K Sharma1, Eric Prud'hommeaux2, Harold R Solbrig1.   

Abstract

A variety of data models have been developed to provide a standardized data interface that supports organizing clinical research data into a standard structure for building the integrated data repositories. HL7 Fast Healthcare Interoperability Resources (FHIR) is emerging as a next generation standards framework for facilitating health care and electronic health records-based data exchange. The objective of the study was to design and assess a consensus-based approach for harmonizing the OHDSI CDM with HL7 FHIR. We leverage a FHIR W5 (Who, What, When, Where, and Why) Classification System for designing the harmonization approaches and assess their utility in achieving the consensus among curators using a standard inter-rater agreement measure. Moderate agreement was achieved for the model-level harmonization (kappa = 0.50) whereas only fair agreement was achieved for the property-level harmonization (kappa = 0.21). FHIR W5 is a useful tool in designing the harmonization approaches between data models and FHIR, and facilitating the consensus achievement.

Entities:  

Keywords:  Observational study; Reference standards; Vocabulary; controlled

Mesh:

Year:  2017        PMID: 29295227      PMCID: PMC5939955     

Source DB:  PubMed          Journal:  Stud Health Technol Inform        ISSN: 0926-9630


  15 in total

1.  Standards for detailed clinical models as the basis for medical data exchange and decision support.

Authors:  Joseph F Coyle; Angelo Rossi Mori; Stanley M Huff
Journal:  Int J Med Inform       Date:  2003-03       Impact factor: 4.046

2.  Practices and perspectives on building integrated data repositories: results from a 2010 CTSA survey.

Authors:  Sandra L MacKenzie; Matt C Wyatt; Robert Schuff; Jessica D Tenenbaum; Nick Anderson
Journal:  J Am Med Inform Assoc       Date:  2012-03-21       Impact factor: 4.497

3.  Target-enrichment sequencing and copy number evaluation in inherited polyneuropathy.

Authors:  Wei Wang; Chen Wang; D Brian Dawson; Erik C Thorland; Patrick A Lundquist; Bruce W Eckloff; Yanhong Wu; Saurabh Baheti; Jared M Evans; Steven S Scherer; Peter J Dyck; Christopher J Klein
Journal:  Neurology       Date:  2016-04-13       Impact factor: 9.910

4.  The Shared Health Research Information Network (SHRINE): a prototype federated query tool for clinical data repositories.

Authors:  Griffin M Weber; Shawn N Murphy; Andrew J McMurry; Douglas Macfadden; Daniel J Nigrin; Susanne Churchill; Isaac S Kohane
Journal:  J Am Med Inform Assoc       Date:  2009-06-30       Impact factor: 4.497

5.  Harmonization of detailed clinical models with clinical study data standards.

Authors:  G Jiang; J Evans; T A Oniki; J F Coyle; L Bain; S M Huff; R D Kush; C G Chute
Journal:  Methods Inf Med       Date:  2014-11-26       Impact factor: 2.176

6.  Computing health quality measures using Informatics for Integrating Biology and the Bedside.

Authors:  Jeffrey G Klann; Shawn N Murphy
Journal:  J Med Internet Res       Date:  2013-04-19       Impact factor: 5.428

Review 7.  The impact of human copy number variation on gene expression.

Authors:  Eric R Gamazon; Barbara E Stranger
Journal:  Brief Funct Genomics       Date:  2015-04-27       Impact factor: 4.241

8.  Whole-exome analysis reveals novel somatic genomic alterations associated with outcome in immunochemotherapy-treated diffuse large B-cell lymphoma.

Authors:  A J Novak; Y W Asmann; M J Maurer; C Wang; S L Slager; L S Hodge; M Manske; T Price-Troska; Z-Z Yang; M T Zimmermann; G S Nowakowski; S M Ansell; T E Witzig; E McPhail; R Ketterling; A L Feldman; A Dogan; B K Link; T M Habermann; J R Cerhan
Journal:  Blood Cancer J       Date:  2015-08-28       Impact factor: 11.037

9.  tranSMART: An Open Source and Community-Driven Informatics and Data Sharing Platform for Clinical and Translational Research.

Authors:  Brian D Athey; Michael Braxenthaler; Magali Haas; Yike Guo
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2013-03-18

10.  Query Health: standards-based, cross-platform population health surveillance.

Authors:  Jeffrey G Klann; Michael D Buck; Jeffrey Brown; Marc Hadley; Richard Elmore; Griffin M Weber; Shawn N Murphy
Journal:  J Am Med Inform Assoc       Date:  2014-04-03       Impact factor: 4.497

View more
  9 in total

1.  Considerations for Improving the Portability of Electronic Health Record-Based Phenotype Algorithms.

Authors:  Luke V Rasmussen; Pascal S Brandt; Guoqian Jiang; Richard C Kiefer; Jennifer A Pacheco; Prakash Adekkanattu; Jessica S Ancker; Fei Wang; Zhenxing Xu; Jyotishman Pathak; Yuan Luo
Journal:  AMIA Annu Symp Proc       Date:  2020-03-04

Review 2.  HL7 FHIR-based tools and initiatives to support clinical research: a scoping review.

Authors:  Stephany N Duda; Nan Kennedy; Douglas Conway; Alex C Cheng; Viet Nguyen; Teresa Zayas-Cabán; Paul A Harris
Journal:  J Am Med Inform Assoc       Date:  2022-08-16       Impact factor: 7.942

Review 3.  Standardization and digitization of clinical data in multiple sclerosis.

Authors:  Marcus D'Souza; Athina Papadopoulou; Christophe Girardey; Ludwig Kappos
Journal:  Nat Rev Neurol       Date:  2021-01-15       Impact factor: 42.937

4.  Development and validation of a prognostic model predicting symptomatic hemorrhagic transformation in acute ischemic stroke at scale in the OHDSI network.

Authors:  Qiong Wang; Jenna M Reps; Kristin Feeney Kostka; Patrick B Ryan; Yuhui Zou; Erica A Voss; Peter R Rijnbeek; RuiJun Chen; Gowtham A Rao; Henry Morgan Stewart; Andrew E Williams; Ross D Williams; Mui Van Zandt; Thomas Falconer; Margarita Fernandez-Chas; Rohit Vashisht; Stephen R Pfohl; Nigam H Shah; Suranga N Kasthurirathne; Seng Chan You; Qing Jiang; Christian Reich; Yi Zhou
Journal:  PLoS One       Date:  2020-01-07       Impact factor: 3.240

5.  Automatic Identification of Patients With Unexplained Left Ventricular Hypertrophy in Electronic Health Record Data to Improve Targeted Treatment and Family Screening.

Authors:  Arjan Sammani; Mark Jansen; Nynke M de Vries; Nicolaas de Jonge; Annette F Baas; Anneline S J M Te Riele; Folkert W Asselbergs; Marish I F J Oerlemans
Journal:  Front Cardiovasc Med       Date:  2022-04-15

Review 6.  Fast Healthcare Interoperability Resources (FHIR) for Interoperability in Health Research: Systematic Review.

Authors:  Carina Nina Vorisek; Moritz Lehne; Sophie Anne Ines Klopfenstein; Paula Josephine Mayer; Alexander Bartschke; Thomas Haese; Sylvia Thun
Journal:  JMIR Med Inform       Date:  2022-07-19

7.  Assessment of a Machine Learning Model Applied to Harmonized Electronic Health Record Data for the Prediction of Incident Atrial Fibrillation.

Authors:  Premanand Tiwari; Kathryn L Colborn; Derek E Smith; Fuyong Xing; Debashis Ghosh; Michael A Rosenberg
Journal:  JAMA Netw Open       Date:  2020-01-03

8.  Fast Healthcare Interoperability Resources (FHIR) as a Meta Model to Integrate Common Data Models: Development of a Tool and Quantitative Validation Study.

Authors:  Emily Rose Pfaff; James Champion; Robert Louis Bradford; Marshall Clark; Hao Xu; Karamarie Fecho; Ashok Krishnamurthy; Steven Cox; Christopher G Chute; Casey Overby Taylor; Stan Ahalt
Journal:  JMIR Med Inform       Date:  2019-10-16

9.  Prediction of incident myocardial infarction using machine learning applied to harmonized electronic health record data.

Authors:  Divneet Mandair; Premanand Tiwari; Steven Simon; Kathryn L Colborn; Michael A Rosenberg
Journal:  BMC Med Inform Decis Mak       Date:  2020-10-02       Impact factor: 2.796

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.