Literature DB >> 20190053

Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2).

Shawn N Murphy1, Griffin Weber, Michael Mendis, Vivian Gainer, Henry C Chueh, Susanne Churchill, Isaac Kohane.   

Abstract

Informatics for Integrating Biology and the Bedside (i2b2) is one of seven projects sponsored by the NIH Roadmap National Centers for Biomedical Computing (http://www.ncbcs.org). Its mission is to provide clinical investigators with the tools necessary to integrate medical record and clinical research data in the genomics age, a software suite to construct and integrate the modern clinical research chart. i2b2 software may be used by an enterprise's research community to find sets of interesting patients from electronic patient medical record data, while preserving patient privacy through a query tool interface. Project-specific mini-databases ("data marts") can be created from these sets to make highly detailed data available on these specific patients to the investigators on the i2b2 platform, as reviewed and restricted by the Institutional Review Board. The current version of this software has been released into the public domain and is available at the URL: http://www.i2b2.org/software.

Entities:  

Mesh:

Year:  2010        PMID: 20190053      PMCID: PMC3000779          DOI: 10.1136/jamia.2009.000893

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  16 in total

1.  A security architecture for query tools used to access large biomedical databases.

Authors:  Shawn N Murphy; Henry C Chueh
Journal:  Proc AMIA Symp       Date:  2002

2.  Future developments of medical informatics from the viewpoint of networked clinical research. Interoperability and integration.

Authors:  C Ohmann; W Kuchinke
Journal:  Methods Inf Med       Date:  2009       Impact factor: 2.176

3.  Perspectives for medical informatics. Reusing the electronic medical record for clinical research.

Authors:  H U Prokosch; T Ganslandt
Journal:  Methods Inf Med       Date:  2009       Impact factor: 2.176

4.  Instrumenting the health care enterprise for discovery research in the genomic era.

Authors:  Shawn Murphy; Susanne Churchill; Lynn Bry; Henry Chueh; Scott Weiss; Ross Lazarus; Qing Zeng; Anil Dubey; Vivian Gainer; Michael Mendis; John Glaser; Isaac Kohane
Journal:  Genome Res       Date:  2009-07-14       Impact factor: 9.043

5.  The Shared Health Research Information Network (SHRINE): a prototype federated query tool for clinical data repositories.

Authors:  Griffin M Weber; Shawn N Murphy; Andrew J McMurry; Douglas Macfadden; Daniel J Nigrin; Susanne Churchill; Isaac S Kohane
Journal:  J Am Med Inform Assoc       Date:  2009-06-30       Impact factor: 4.497

6.  Data extraction and ad hoc query of an entity-attribute-value database.

Authors:  P M Nadkarni; C Brandt
Journal:  J Am Med Inform Assoc       Date:  1998 Nov-Dec       Impact factor: 4.497

7.  A chartless record--is it adequate?

Authors:  W W Stead; W E Hammond; M J Straube
Journal:  J Med Syst       Date:  1983-04       Impact factor: 4.460

8.  Generic database design for patient management information.

Authors:  S B Johnson; T Paul; A Khenina
Journal:  Proc AMIA Annu Fall Symp       Date:  1997

9.  A visual interface designed for novice users to find research patient cohorts in a large biomedical database.

Authors:  Shawn N Murphy; Vivian Gainer; Henry C Chueh
Journal:  AMIA Annu Symp Proc       Date:  2003

10.  Use of primary care electronic medical record database in drug efficacy research on cardiovascular outcomes: comparison of database and randomised controlled trial findings.

Authors:  Richard L Tannen; Mark G Weiner; Dawei Xie
Journal:  BMJ       Date:  2009-01-27
View more
  380 in total

1.  Data analysis and data mining: current issues in biomedical informatics.

Authors:  R Bellazzi; M Diomidous; I N Sarkar; K Takabayashi; A Ziegler; A T McCray
Journal:  Methods Inf Med       Date:  2011       Impact factor: 2.176

2.  Automated discovery of drug treatment patterns for endocrine therapy of breast cancer within an electronic medical record.

Authors:  Guergana K Savova; Janet E Olson; Sean P Murphy; Victoria L Cafourek; Fergus J Couch; Matthew P Goetz; James N Ingle; Vera J Suman; Christopher G Chute; Richard M Weinshilboum
Journal:  J Am Med Inform Assoc       Date:  2011-12-01       Impact factor: 4.497

Review 3.  Bioinformatics for personal genome interpretation.

Authors:  Emidio Capriotti; Nathan L Nehrt; Maricel G Kann; Yana Bromberg
Journal:  Brief Bioinform       Date:  2012-01-13       Impact factor: 11.622

Review 4.  Natural language processing systems for capturing and standardizing unstructured clinical information: A systematic review.

Authors:  Kory Kreimeyer; Matthew Foster; Abhishek Pandey; Nina Arya; Gwendolyn Halford; Sandra F Jones; Richard Forshee; Mark Walderhaug; Taxiarchis Botsis
Journal:  J Biomed Inform       Date:  2017-07-17       Impact factor: 6.317

5.  Using Closure Tables to Enable Cross-Querying of Ontologies in Database-Driven Applications.

Authors:  Daniel R Harris; Darren W Henderson; Jeffery C Talbert
Journal:  IEEE EMBS Int Conf Biomed Health Inform       Date:  2017-04-13

6.  Robust clinical marker identification for diabetic kidney disease with ensemble feature selection.

Authors:  Xing Song; Lemuel R Waitman; Yong Hu; Alan S L Yu; David C Robbins; Mei Liu
Journal:  J Am Med Inform Assoc       Date:  2019-03-01       Impact factor: 4.497

7.  Comorbidity clusters in autism spectrum disorders: an electronic health record time-series analysis.

Authors:  Finale Doshi-Velez; Yaorong Ge; Isaac Kohane
Journal:  Pediatrics       Date:  2013-12-09       Impact factor: 7.124

8.  Antidepressant response in patients with major depression exposed to NSAIDs: a pharmacovigilance study.

Authors:  Patience J Gallagher; Victor Castro; Maurizio Fava; Jeffrey B Weilburg; Shawn N Murphy; Vivian S Gainer; Susanne E Churchill; Isaac S Kohane; Dan V Iosifescu; Jordan W Smoller; Roy H Perlis
Journal:  Am J Psychiatry       Date:  2012-10       Impact factor: 18.112

9.  Easily configured real-time CPOE Pick Off Tool supporting focused clinical research and quality improvement.

Authors:  Benjamin P Rosenbaum; Nikolay Silkin; Randolph A Miller
Journal:  J Am Med Inform Assoc       Date:  2013-11-28       Impact factor: 4.497

10.  Clinical Bioinformatics: challenges and opportunities.

Authors:  Riccardo Bellazzi; Marco Masseroli; Shawn Murphy; Amnon Shabo; Paolo Romano
Journal:  BMC Bioinformatics       Date:  2012-09-07       Impact factor: 3.169

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.