Literature DB >> 23586585

Dynamic and electronic transport properties of DNA translocation through graphene nanopores.

Stanislav M Avdoshenko1, Daijiro Nozaki, Claudia Gomes da Rocha, Jhon W González, Myeong H Lee, Rafael Gutierrez, Gianaurelio Cuniberti.   

Abstract

Graphene layers have been targeted in the last years as excellent host materials for sensing a remarkable variety of gases and molecules. Such sensing abilities can also benefit other important scientific fields such as medicine and biology. This has automatically led scientists to probe graphene as a potential platform for sequencing DNA strands. In this work, we use robust numerical tools to model the dynamic and electronic properties of molecular sensor devices composed of a graphene nanopore through which DNA molecules are driven by external electric fields. We performed molecular dynamic simulations to determine the relation between the intensity of the electric field and the translocation time spent by the DNA to pass through the pore. Our results reveal that one can have extra control on the DNA passage when four additional graphene layers are deposited on the top of the main graphene platform containing the pore in a 2 × 2 grid arrangement. In addition to the dynamic analysis, we carried electronic transport calculations on realistic pore structures with diameters reaching nanometer scales. The transmission obtained along the graphene sensor at the Fermi level is affected by the presence of the DNA. However, it is rather hard to distinguish the respective nucleobases. This scenario can be significantly altered when the transport is conducted away from the Fermi level of the graphene platform. Under an energy shift, we observed that the graphene pore manifests selectiveness toward DNA nucleobases.

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Year:  2013        PMID: 23586585     DOI: 10.1021/nl304735k

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  25 in total

1.  Material witness: Improving pore performance.

Authors:  Philip Ball
Journal:  Nat Mater       Date:  2013-11       Impact factor: 43.841

Review 2.  Challenges in DNA motion control and sequence readout using nanopore devices.

Authors:  Spencer Carson; Meni Wanunu
Journal:  Nanotechnology       Date:  2015-02-02       Impact factor: 3.874

3.  Gate-Modulated Graphene Quantum Point Contact Device for DNA Sensing.

Authors:  Anuj Girdhar; Chaitanya Sathe; Klaus Schulten; Jean-Pierre Leburton
Journal:  J Comput Electron       Date:  2014-12-01       Impact factor: 1.807

4.  Electronic detection of dsDNA transition from helical to zipper conformation using graphene nanopores.

Authors:  Chaitanya Sathe; Anuj Girdhar; Jean-Pierre Leburton; Klaus Schulten
Journal:  Nanotechnology       Date:  2014-10-17       Impact factor: 3.874

5.  Tunable graphene quantum point contact transistor for DNA detection and characterization.

Authors:  Anuj Girdhar; Chaitanya Sathe; Klaus Schulten; Jean-Pierre Leburton
Journal:  Nanotechnology       Date:  2015-03-13       Impact factor: 3.874

6.  Surface modification of graphene nanopores for protein translocation.

Authors:  Y P Shan; P B Tiwari; P Krishnakumar; I Vlassiouk; W Z Li; X W Wang; Y Darici; S M Lindsay; H D Wang; S Smirnov; J He
Journal:  Nanotechnology       Date:  2013-11-14       Impact factor: 3.874

7.  Graphene quantum point contact transistor for DNA sensing.

Authors:  Anuj Girdhar; Chaitanya Sathe; Klaus Schulten; Jean-Pierre Leburton
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-30       Impact factor: 11.205

8.  Cross-Talk Between Ionic and Nanoribbon Current Signals in Graphene Nanoribbon-Nanopore Sensors for Single-Molecule Detection.

Authors:  Matthew Puster; Adrian Balan; Julio A Rodríguez-Manzo; Gopinath Danda; Jae-Hyuk Ahn; William Parkin; Marija Drndić
Journal:  Small       Date:  2015-10-26       Impact factor: 13.281

Review 9.  Graphene nanodevices for DNA sequencing.

Authors:  Stephanie J Heerema; Cees Dekker
Journal:  Nat Nanotechnol       Date:  2016-02       Impact factor: 39.213

10.  Thermally modulated biomolecule transport through nanoconfined channels.

Authors:  Lei Liu; Lizhong Zhu
Journal:  Nanoscale Res Lett       Date:  2015-04-25       Impact factor: 4.703

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