Literature DB >> 23561843

A mechanism for controlled access to GWAS data: experience of the GAIN Data Access Committee.

Erin M Ramos1, Corina Din-Lovinescu, Ebony B Bookman, Lisa J McNeil, Carl C Baker, Georgy Godynskiy, Emily L Harris, Thomas Lehner, Catherine McKeon, Joel Moss, Vaurice L Starks, Stephen T Sherry, Teri A Manolio, Laura Lyman Rodriguez.   

Abstract

The Genetic Association Information Network (GAIN) Data Access Committee was established in June 2007 to provide prompt and fair access to data from six genome-wide association studies through the database of Genotypes and Phenotypes (dbGaP). Of 945 project requests received through 2011, 749 (79%) have been approved; median receipt-to-approval time decreased from 14 days in 2007 to 8 days in 2011. Over half (54%) of the proposed research uses were for GAIN-specific phenotypes; other uses were for method development (26%) and adding controls to other studies (17%). Eight data-management incidents, defined as compromises of any of the data-use conditions, occurred among nine approved users; most were procedural violations, and none violated participant confidentiality. Over 5 years of experience with GAIN data access has demonstrated substantial use of GAIN data by investigators from academic, nonprofit, and for-profit institutions with relatively few and contained policy violations. The availability of GAIN data has allowed for advances in both the understanding of the genetic underpinnings of mental-health disorders, diabetes, and psoriasis and the development and refinement of statistical methods for identifying genetic and environmental factors related to complex common diseases.
Copyright © 2013 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23561843      PMCID: PMC3617375          DOI: 10.1016/j.ajhg.2012.08.034

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  13 in total

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2.  The genome-wide association studies data sharing policy.

Authors:  Susan B Shurin
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3.  The NCBI dbGaP database of genotypes and phenotypes.

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Journal:  Nat Genet       Date:  2007-10       Impact factor: 38.330

4.  New models of collaboration in genome-wide association studies: the Genetic Association Information Network.

Authors:  Teri A Manolio; Laura Lyman Rodriguez; Lisa Brooks; Gonçalo Abecasis; Dennis Ballinger; Mark Daly; Peter Donnelly; Stephen V Faraone; Kelly Frazer; Stacey Gabriel; Pablo Gejman; Alan Guttmacher; Emily L Harris; Thomas Insel; John R Kelsoe; Eric Lander; Norma McCowin; Matthew D Mailman; Elizabeth Nabel; James Ostell; Elizabeth Pugh; Stephen Sherry; Patrick F Sullivan; John F Thompson; James Warram; David Wholley; Patrice M Milos; Francis S Collins
Journal:  Nat Genet       Date:  2007-09       Impact factor: 38.330

5.  Control for confounding in case-control studies using the stratification score, a retrospective balancing score.

Authors:  Andrew S Allen; Glen A Satten
Journal:  Am J Epidemiol       Date:  2011-03-14       Impact factor: 4.897

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Authors:  Melissa Gymrek; Amy L McGuire; David Golan; Eran Halperin; Yaniv Erlich
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7.  Glad you asked: participants' opinions of re-consent for dbGap data submission.

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Authors:  Patrick F Sullivan
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9.  dbGaP data access requests: a call for greater transparency.

Authors:  Lorelei Walker; Helene Starks; Kathleen M West; Stephanie M Fullerton
Journal:  Sci Transl Med       Date:  2011-12-14       Impact factor: 17.956

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Journal:  PLoS Genet       Date:  2008-08-29       Impact factor: 5.917

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Authors:  Sean Simmons; Bonnie Berger
Journal:  Proc IEEE Symp Secur Priv Workshops       Date:  2015-07-20

Review 2.  Routes for breaching and protecting genetic privacy.

Authors:  Yaniv Erlich; Arvind Narayanan
Journal:  Nat Rev Genet       Date:  2014-05-08       Impact factor: 53.242

3.  The Changing Nature of Scientific Sharing and Withholding in Academic Life Sciences Research: Trends From National Surveys in 2000 and 2013.

Authors:  Darren E Zinner; Genevieve Pham-Kanter; Eric G Campbell
Journal:  Acad Med       Date:  2016-03       Impact factor: 6.893

4.  Informed Consent in Translational Genomics: Insufficient Without Trustworthy Governance.

Authors:  Wylie Burke; Laura M Beskow; Susan Brown Trinidad; Stephanie M Fullerton; Kathleen Brelsford
Journal:  J Law Med Ethics       Date:  2018-03-27       Impact factor: 1.718

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Authors:  Donna Wilcock; Gregory Jicha; Deborah Blacker; Marilyn S Albert; Lina M D'Orazio; Fanny M Elahi; Myriam Fornage; Jason D Hinman; Janice Knoefel; Joel Kramer; Richard J Kryscio; Melissa Lamar; Abhay Moghekar; Jillian Prestopnik; John M Ringman; Gary Rosenberg; Abhay Sagare; Claudia L Satizabal; Julie Schneider; Sudha Seshadri; Sandeepa Sur; Russell P Tracy; Sevil Yasar; Victoria Williams; Herpreet Singh; Lidiya Mazina; Karl G Helmer; Roderick A Corriveau; Kristin Schwab; Pia Kivisäkk; Steven M Greenberg
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6.  Controlled Access under Review: Improving the Governance of Genomic Data Access.

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Review 7.  If you build it, they will come: unintended future uses of organised health data collections.

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Journal:  BMC Med Ethics       Date:  2016-09-06       Impact factor: 2.652

8.  Evolving data access policy: The Canadian context.

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9.  Data use under the NIH GWAS data sharing policy and future directions.

Authors:  Dina N Paltoo; Laura Lyman Rodriguez; Michael Feolo; Elizabeth Gillanders; Erin M Ramos; Joni L Rutter; Stephen Sherry; Vivian Ota Wang; Alice Bailey; Rebecca Baker; Mark Caulder; Emily L Harris; Kristofor Langlais; Hilary Leeds; Erin Luetkemeier; Taunton Paine; Tamar Roomian; Kimberly Tryka; Amy Patterson; Eric D Green
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10.  Consent Codes: Upholding Standard Data Use Conditions.

Authors:  Stephanie O M Dyke; Anthony A Philippakis; Jordi Rambla De Argila; Dina N Paltoo; Erin S Luetkemeier; Bartha M Knoppers; Anthony J Brookes; J Dylan Spalding; Mark Thompson; Marco Roos; Kym M Boycott; Michael Brudno; Matthew Hurles; Heidi L Rehm; Andreas Matern; Marc Fiume; Stephen T Sherry
Journal:  PLoS Genet       Date:  2016-01-21       Impact factor: 5.917

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