Literature DB >> 22130871

The KEGG databases and tools facilitating omics analysis: latest developments involving human diseases and pharmaceuticals.

Masaaki Kotera1, Mika Hirakawa, Toshiaki Tokimatsu, Susumu Goto, Minoru Kanehisa.   

Abstract

In this chapter, we demonstrate the usability of the KEGG (Kyoto encyclopedia of genes and genomes) databases and tools, especially focusing on the visualization of the omics data. The desktop application KegArray and many Web-based tools are tightly integrated with the KEGG knowledgebase, which helps visualize and interpret large amount of data derived from high-throughput measurement techniques including microarray, metagenome, and metabolome analyses. Recently developed resources for human disease, drug, and plant research are also mentioned.

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Year:  2012        PMID: 22130871     DOI: 10.1007/978-1-61779-400-1_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  43 in total

1.  FacPad: Bayesian sparse factor modeling for the inference of pathways responsive to drug treatment.

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Journal:  Bioinformatics       Date:  2012-08-24       Impact factor: 6.937

2.  Systemic alterations in the metabolome of diabetic NOD mice delineate increased oxidative stress accompanied by reduced inflammation and hypertriglyceremia.

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4.  Integrated Analysis of Transcriptomic, miRNA and Proteomic Changes of a Novel Hybrid Yellow Catfish Uncovers Key Roles for miRNAs in Heterosis.

Authors:  Guosong Zhang; Jie Li; Jiajia Zhang; Xia Liang; Xinyu Zhang; Tao Wang; Shaowu Yin
Journal:  Mol Cell Proteomics       Date:  2019-05-15       Impact factor: 5.911

Review 5.  Molecular tools for chemical biotechnology.

Authors:  Stephanie Galanie; Michael S Siddiqui; Christina D Smolke
Journal:  Curr Opin Biotechnol       Date:  2013-03-23       Impact factor: 9.740

Review 6.  Enzyme informatics.

Authors:  Rosanna G Alderson; Luna De Ferrari; Lazaros Mavridis; James L McDonagh; John B O Mitchell; Neetika Nath
Journal:  Curr Top Med Chem       Date:  2012       Impact factor: 3.295

7.  Gene expression rate comparison for multiple high-throughput datasets.

Authors:  Chien-Ming Chen; Tsan-Huang Shih; Tun-Wen Pai; Zhen-Long Liu; Margaret Dah-Tsyr Chang; Chin-Hwa Hu
Journal:  IET Syst Biol       Date:  2013-10       Impact factor: 1.615

8.  IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks.

Authors:  Aaron K Wong; Christopher Y Park; Casey S Greene; Lars A Bongo; Yuanfang Guan; Olga G Troyanskaya
Journal:  Nucleic Acids Res       Date:  2012-06-07       Impact factor: 16.971

9.  GenColors-based comparative genome databases for small eukaryotic genomes.

Authors:  Marius Felder; Alessandro Romualdi; Andreas Petzold; Matthias Platzer; Jürgen Sühnel; Gernot Glöckner
Journal:  Nucleic Acids Res       Date:  2012-11-28       Impact factor: 16.971

10.  Functional knowledge transfer for high-accuracy prediction of under-studied biological processes.

Authors:  Christopher Y Park; Aaron K Wong; Casey S Greene; Jessica Rowland; Yuanfang Guan; Lars A Bongo; Rebecca D Burdine; Olga G Troyanskaya
Journal:  PLoS Comput Biol       Date:  2013-03-14       Impact factor: 4.475

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