Literature DB >> 21602812

Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol.

Harry Yim1, Robert Haselbeck, Wei Niu, Catherine Pujol-Baxley, Anthony Burgard, Jeff Boldt, Julia Khandurina, John D Trawick, Robin E Osterhout, Rosary Stephen, Jazell Estadilla, Sy Teisan, H Brett Schreyer, Stefan Andrae, Tae Hoon Yang, Sang Yup Lee, Mark J Burk, Stephen Van Dien.   

Abstract

1,4-Butanediol (BDO) is an important commodity chemical used to manufacture over 2.5 million tons annually of valuable polymers, and it is currently produced exclusively through feedstocks derived from oil and natural gas. Herein we report what are to our knowledge the first direct biocatalytic routes to BDO from renewable carbohydrate feedstocks, leading to a strain of Escherichia coli capable of producing 18 g l(-1) of this highly reduced, non-natural chemical. A pathway-identification algorithm elucidated multiple pathways for the biosynthesis of BDO from common metabolic intermediates. Guided by a genome-scale metabolic model, we engineered the E. coli host to enhance anaerobic operation of the oxidative tricarboxylic acid cycle, thereby generating reducing power to drive the BDO pathway. The organism produced BDO from glucose, xylose, sucrose and biomass-derived mixed sugar streams. This work demonstrates a systems-based metabolic engineering approach to strain design and development that can enable new bioprocesses for commodity chemicals that are not naturally produced by living cells.

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Year:  2011        PMID: 21602812     DOI: 10.1038/nchembio.580

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  39 in total

1.  Enzymatic evidence for an involvement of pyruvate dehydrogenase in the anaerobic glycerol metabolism of Klebsiella pneumoniae.

Authors:  K Menzel; A P Zeng; W D Deckwer
Journal:  J Biotechnol       Date:  1997-08-11       Impact factor: 3.307

2.  arcA (dye), a global regulatory gene in Escherichia coli mediating repression of enzymes in aerobic pathways.

Authors:  S Iuchi; E C Lin
Journal:  Proc Natl Acad Sci U S A       Date:  1988-03       Impact factor: 11.205

3.  Analysis of sucrose catabolism in Klebsiella pneumoniae and in Scr+ derivatives of Escherichia coli K12.

Authors:  G A Sprenger; J W Lengeler
Journal:  J Gen Microbiol       Date:  1988-06

4.  Active site mutants of Escherichia coli citrate synthase. Effects of mutations on catalytic and allosteric properties.

Authors:  D S Pereira; L J Donald; D J Hosfield; H W Duckworth
Journal:  J Biol Chem       Date:  1994-01-07       Impact factor: 5.157

5.  Discovery and analysis of novel metabolic pathways for the biosynthesis of industrial chemicals: 3-hydroxypropanoate.

Authors:  Christopher S Henry; Linda J Broadbelt; Vassily Hatzimanikatis
Journal:  Biotechnol Bioeng       Date:  2010-06-15       Impact factor: 4.530

6.  Metabolic pathway for biosynthesis of poly(3-hydroxybutyrate-co-4-hydroxybutyrate) from 4-hydroxybutyrate by Alcaligenes eutrophus.

Authors:  H E Valentin; G Zwingmann; A Schönebaum; A Steinbüchel
Journal:  Eur J Biochem       Date:  1995-01-15

7.  Dihydrolipoamide dehydrogenase mutation alters the NADH sensitivity of pyruvate dehydrogenase complex of Escherichia coli K-12.

Authors:  Youngnyun Kim; L O Ingram; K T Shanmugam
Journal:  J Bacteriol       Date:  2008-03-28       Impact factor: 3.490

8.  Probing the roles of key residues in the unique regulatory NADH binding site of type II citrate synthase of Escherichia coli.

Authors:  David J Stokell; Lynda J Donald; Robert Maurus; Nham T Nguyen; Gillian Sadler; Kajal Choudhary; Philip G Hultin; Gary D Brayer; Harry W Duckworth
Journal:  J Biol Chem       Date:  2003-06-23       Impact factor: 5.157

9.  Systems metabolic engineering of Escherichia coli for L-threonine production.

Authors:  Kwang Ho Lee; Jin Hwan Park; Tae Yong Kim; Hyun Uk Kim; Sang Yup Lee
Journal:  Mol Syst Biol       Date:  2007-12-04       Impact factor: 11.429

10.  An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR).

Authors:  Jennifer L Reed; Thuy D Vo; Christophe H Schilling; Bernhard O Palsson
Journal:  Genome Biol       Date:  2003-08-28       Impact factor: 13.583

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  207 in total

Review 1.  Systems strategies for developing industrial microbial strains.

Authors:  Sang Yup Lee; Hyun Uk Kim
Journal:  Nat Biotechnol       Date:  2015-10       Impact factor: 54.908

2.  Biological synthesis unbounded?

Authors:  Brian F Pfleger; Kristala L J Prather
Journal:  Nat Biotechnol       Date:  2015-11       Impact factor: 54.908

Review 3.  In Silico Constraint-Based Strain Optimization Methods: the Quest for Optimal Cell Factories.

Authors:  Paulo Maia; Miguel Rocha; Isabel Rocha
Journal:  Microbiol Mol Biol Rev       Date:  2015-11-25       Impact factor: 11.056

4.  Bacterial synthesis of C3-C5 diols via extending amino acid catabolism.

Authors:  Jian Wang; Chenyi Li; Yusong Zou; Yajun Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-27       Impact factor: 11.205

5.  O-Succinyl-L-homoserine-based C4-chemical production: succinic acid, homoserine lactone, γ-butyrolactone, γ-butyrolactone derivatives, and 1,4-butanediol.

Authors:  Kuk-Ki Hong; Jeong Hyun Kim; Jong Hyun Yoon; Hye-Min Park; Su Jin Choi; Gyu Hyeon Song; Jea Chun Lee; Young-Lyeol Yang; Hyun Kwan Shin; Ju Nam Kim; Kyung Ho Cho; Jung Ho Lee
Journal:  J Ind Microbiol Biotechnol       Date:  2014-08-26       Impact factor: 3.346

Review 6.  Rethinking glycolysis: on the biochemical logic of metabolic pathways.

Authors:  Arren Bar-Even; Avi Flamholz; Elad Noor; Ron Milo
Journal:  Nat Chem Biol       Date:  2012-05-17       Impact factor: 15.040

Review 7.  Systems metabolic engineering of microorganisms for natural and non-natural chemicals.

Authors:  Jeong Wook Lee; Dokyun Na; Jong Myoung Park; Joungmin Lee; Sol Choi; Sang Yup Lee
Journal:  Nat Chem Biol       Date:  2012-05-17       Impact factor: 15.040

Review 8.  Microbial production of advanced biofuels.

Authors:  Jay Keasling; Hector Garcia Martin; Taek Soon Lee; Aindrila Mukhopadhyay; Steven W Singer; Eric Sundstrom
Journal:  Nat Rev Microbiol       Date:  2021-06-25       Impact factor: 60.633

9.  Systems Analysis of NADH Dehydrogenase Mutants Reveals Flexibility and Limits of Pseudomonas taiwanensis VLB120's Metabolism.

Authors:  Salome C Nies; Robert Dinger; Yan Chen; Gossa G Wordofa; Mette Kristensen; Konstantin Schneider; Jochen Büchs; Christopher J Petzold; Jay D Keasling; Lars M Blank; Birgitta E Ebert
Journal:  Appl Environ Microbiol       Date:  2020-05-19       Impact factor: 4.792

10.  Comparative evaluation of open source software for mapping between metabolite identifiers in metabolic network reconstructions: application to Recon 2.

Authors:  Hulda S Haraldsdóttir; Ines Thiele; Ronan Mt Fleming
Journal:  J Cheminform       Date:  2014-01-27       Impact factor: 5.514

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