| Literature DB >> 23476517 |
Kaliyaperumal Thanigaimani1, Nuridayanti Che Khalib, Suhana Arshad, Ibrahim Abdul Razak.
Abstract
In the title salt, C6H9N2(+)·C7H4ClO2(-), the 3-chloro-benzoate anion shows a whole-mol-ecule disorder over two positions with a refined occupancy ratio of 0.505 (4):0.495 (4). In the crystal, the cations and anions are linked via N-H⋯O hydrogen bonds, forming a centrosymmetric 2 + 2 aggregate with R2(2)(8) and R4(2)(8) ring motifs. The crystal structure also features a π-π stacking inter-action between the pyridinium rings with a centroid-centroid distance of 3.8339 (9) Å.Entities:
Year: 2013 PMID: 23476517 PMCID: PMC3588495 DOI: 10.1107/S1600536813002559
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H9N2+·C7H4ClO2− | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 4651 reflections |
| θ = 2.7–29.3° | |
| µ = 0.30 mm−1 | |
| β = 100.924 (1)° | Needle, colourless |
| 0.36 × 0.06 × 0.05 mm | |
| Bruker SMART APEXII DUO CCD area-detector diffractometer | 3575 independent reflections |
| Radiation source: fine-focus sealed tube | 2446 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 30.0°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 24731 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3575 reflections | (Δ/σ)max < 0.001 |
| 267 parameters | Δρmax = 0.29 e Å−3 |
| 5 restraints | Δρmin = −0.28 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| Cl1 | 0.51442 (12) | 0.09433 (16) | 0.5251 (4) | 0.0377 (5) | 0.505 (4) |
| O1 | 0.3604 (3) | 0.4344 (4) | 0.2546 (10) | 0.0298 (12) | 0.505 (4) |
| O2 | 0.3335 (7) | 0.2966 (7) | 0.1833 (12) | 0.0279 (16) | 0.505 (4) |
| C7 | 0.3716 (3) | 0.3536 (4) | 0.2547 (8) | 0.0223 (11) | 0.505 (4) |
| C8 | 0.43409 (15) | 0.3242 (2) | 0.3507 (6) | 0.0224 (7) | 0.505 (4) |
| C9 | 0.4472 (5) | 0.2368 (8) | 0.3839 (11) | 0.0217 (13) | 0.505 (4) |
| H9A | 0.4166 | 0.1945 | 0.3394 | 0.026* | 0.505 (4) |
| C10 | 0.5042 (5) | 0.2072 (5) | 0.4815 (14) | 0.0368 (18) | 0.505 (4) |
| C11 | 0.54930 (16) | 0.2695 (3) | 0.5297 (6) | 0.0348 (9) | 0.505 (4) |
| H11A | 0.5890 | 0.2515 | 0.5885 | 0.042* | 0.505 (4) |
| C12 | 0.53779 (14) | 0.3580 (3) | 0.4939 (5) | 0.0345 (9) | 0.505 (4) |
| H12A | 0.5693 | 0.4000 | 0.5301 | 0.041* | 0.505 (4) |
| C13 | 0.48029 (14) | 0.3853 (2) | 0.4052 (5) | 0.0286 (8) | 0.505 (4) |
| H13A | 0.4725 | 0.4460 | 0.3816 | 0.034* | 0.505 (4) |
| Cl1X | 0.52750 (12) | 0.11634 (16) | 0.5138 (4) | 0.0336 (4) | 0.495 (4) |
| O1X | 0.3491 (3) | 0.4332 (4) | 0.3044 (10) | 0.0294 (11) | 0.495 (4) |
| O2X | 0.3302 (7) | 0.2910 (8) | 0.2304 (12) | 0.0273 (15) | 0.495 (4) |
| C7X | 0.3620 (3) | 0.3525 (4) | 0.3103 (9) | 0.0225 (11) | 0.495 (4) |
| C8X | 0.42352 (17) | 0.3289 (2) | 0.4266 (6) | 0.0222 (8) | 0.495 (4) |
| C9X | 0.4418 (5) | 0.2415 (8) | 0.4305 (11) | 0.0223 (14) | 0.495 (4) |
| H9XA | 0.4152 | 0.1963 | 0.3748 | 0.027* | 0.495 (4) |
| C10X | 0.5005 (5) | 0.2239 (4) | 0.5195 (13) | 0.0314 (16) | 0.495 (4) |
| C11X | 0.53950 (16) | 0.2854 (3) | 0.6185 (6) | 0.0319 (9) | 0.495 (4) |
| H11B | 0.5787 | 0.2691 | 0.6844 | 0.038* | 0.495 (4) |
| C12X | 0.51893 (15) | 0.3713 (2) | 0.6175 (5) | 0.0303 (8) | 0.495 (4) |
| H12B | 0.5445 | 0.4155 | 0.6820 | 0.036* | 0.495 (4) |
| C13X | 0.46134 (15) | 0.3931 (2) | 0.5228 (5) | 0.0272 (8) | 0.495 (4) |
| H13B | 0.4474 | 0.4522 | 0.5233 | 0.033* | 0.495 (4) |
| N1 | 0.25283 (5) | 0.49267 (8) | 0.09853 (17) | 0.0197 (3) | |
| N2 | 0.21460 (7) | 0.35423 (9) | 0.0235 (2) | 0.0337 (4) | |
| C1 | 0.20717 (6) | 0.44124 (10) | 0.0094 (2) | 0.0211 (3) | |
| C2 | 0.15454 (7) | 0.48210 (10) | −0.0898 (2) | 0.0238 (3) | |
| H2A | 0.1223 | 0.4479 | −0.1572 | 0.029* | |
| C3 | 0.15048 (7) | 0.57153 (11) | −0.0877 (2) | 0.0307 (4) | |
| H3A | 0.1149 | 0.5996 | −0.1533 | 0.037* | |
| C4 | 0.19795 (8) | 0.62255 (11) | 0.0095 (3) | 0.0363 (4) | |
| H4A | 0.1944 | 0.6848 | 0.0121 | 0.044* | |
| C5 | 0.24940 (7) | 0.58195 (10) | 0.1006 (2) | 0.0257 (3) | |
| C6 | 0.30466 (8) | 0.62859 (11) | 0.2048 (3) | 0.0372 (4) | |
| H6A | 0.2955 | 0.6913 | 0.2136 | 0.056* | |
| H6B | 0.3388 | 0.6213 | 0.1402 | 0.056* | |
| H6C | 0.3157 | 0.6036 | 0.3284 | 0.056* | |
| H1N1 | 0.1883 (11) | 0.3210 (14) | −0.050 (3) | 0.046 (6)* | |
| H2N2 | 0.2887 (10) | 0.4672 (15) | 0.165 (3) | 0.050 (6)* | |
| H1N2 | 0.2487 (11) | 0.3311 (14) | 0.077 (3) | 0.044 (6)* |
| Cl1 | 0.0260 (10) | 0.0318 (11) | 0.0523 (8) | 0.0162 (6) | 0.0001 (7) | 0.0009 (8) |
| O1 | 0.016 (2) | 0.0172 (13) | 0.051 (4) | −0.0007 (13) | −0.0063 (17) | −0.0018 (18) |
| O2 | 0.020 (2) | 0.0134 (18) | 0.043 (4) | 0.0000 (14) | −0.014 (3) | 0.000 (3) |
| C7 | 0.012 (2) | 0.0175 (16) | 0.035 (3) | −0.0021 (13) | −0.0015 (19) | 0.0004 (19) |
| C8 | 0.0103 (15) | 0.0277 (16) | 0.027 (2) | 0.0008 (11) | −0.0011 (13) | −0.0050 (15) |
| C9 | 0.014 (2) | 0.0240 (19) | 0.028 (4) | 0.0072 (15) | 0.006 (3) | −0.005 (3) |
| C10 | 0.013 (2) | 0.037 (3) | 0.055 (4) | 0.016 (2) | −0.006 (2) | −0.016 (2) |
| C11 | 0.0138 (16) | 0.059 (3) | 0.029 (2) | 0.0094 (15) | −0.0032 (14) | −0.0084 (17) |
| C12 | 0.0134 (15) | 0.054 (2) | 0.0331 (19) | −0.0063 (14) | −0.0032 (12) | −0.0057 (15) |
| C13 | 0.0182 (15) | 0.0351 (17) | 0.0299 (18) | −0.0033 (12) | −0.0019 (12) | −0.0044 (13) |
| Cl1X | 0.0247 (9) | 0.0289 (10) | 0.0442 (7) | 0.0119 (6) | −0.0011 (6) | 0.0025 (7) |
| O1X | 0.021 (3) | 0.0190 (14) | 0.043 (3) | −0.0005 (14) | −0.0066 (16) | −0.0035 (17) |
| O2X | 0.0172 (18) | 0.020 (2) | 0.038 (4) | −0.0025 (14) | −0.011 (3) | 0.002 (2) |
| C7X | 0.013 (2) | 0.0213 (18) | 0.032 (3) | −0.0016 (14) | 0.0023 (18) | 0.002 (2) |
| C8X | 0.0144 (16) | 0.0268 (17) | 0.0247 (19) | −0.0003 (12) | 0.0018 (14) | −0.0018 (15) |
| C9X | 0.010 (2) | 0.035 (3) | 0.023 (3) | 0.0040 (18) | 0.005 (2) | −0.003 (3) |
| C10X | 0.021 (2) | 0.022 (3) | 0.051 (4) | 0.016 (2) | 0.007 (3) | 0.001 (3) |
| C11X | 0.0132 (15) | 0.052 (2) | 0.0276 (19) | 0.0019 (14) | −0.0032 (14) | −0.0008 (17) |
| C12X | 0.0193 (15) | 0.0391 (19) | 0.0294 (18) | −0.0090 (13) | −0.0031 (13) | −0.0029 (14) |
| C13X | 0.0243 (16) | 0.0254 (16) | 0.0302 (18) | −0.0062 (12) | 0.0011 (13) | −0.0025 (12) |
| N1 | 0.0155 (6) | 0.0161 (6) | 0.0264 (6) | 0.0011 (4) | 0.0012 (5) | 0.0000 (4) |
| N2 | 0.0220 (7) | 0.0179 (6) | 0.0526 (9) | 0.0009 (5) | −0.0147 (6) | −0.0074 (6) |
| C1 | 0.0171 (7) | 0.0200 (7) | 0.0251 (7) | 0.0015 (5) | 0.0012 (5) | −0.0020 (5) |
| C2 | 0.0165 (7) | 0.0285 (8) | 0.0253 (7) | 0.0031 (6) | 0.0008 (5) | −0.0008 (6) |
| C3 | 0.0232 (8) | 0.0318 (9) | 0.0356 (9) | 0.0091 (6) | 0.0016 (6) | 0.0068 (7) |
| C4 | 0.0313 (9) | 0.0191 (7) | 0.0563 (11) | 0.0053 (6) | 0.0030 (8) | 0.0057 (7) |
| C5 | 0.0231 (8) | 0.0179 (7) | 0.0366 (8) | −0.0001 (6) | 0.0068 (6) | 0.0006 (6) |
| C6 | 0.0254 (9) | 0.0189 (7) | 0.0652 (12) | −0.0044 (6) | 0.0036 (8) | −0.0039 (7) |
| Cl1—C10 | 1.753 (7) | C11X—C12X | 1.385 (5) |
| O1—C7 | 1.253 (6) | C11X—H11B | 0.9500 |
| O2—C7 | 1.258 (14) | C12X—C13X | 1.383 (4) |
| C7—C8 | 1.509 (8) | C12X—H12B | 0.9500 |
| C8—C9 | 1.372 (12) | C13X—H13B | 0.9500 |
| C8—C13 | 1.390 (5) | N1—C1 | 1.3530 (18) |
| C9—C10 | 1.413 (16) | N1—C5 | 1.3599 (19) |
| C9—H9A | 0.9500 | N1—H2N2 | 0.94 (2) |
| C10—C11 | 1.379 (11) | N2—C1 | 1.335 (2) |
| C11—C12 | 1.385 (6) | N2—H1N1 | 0.88 (2) |
| C11—H11A | 0.9500 | N2—H1N2 | 0.86 (2) |
| C12—C13 | 1.390 (4) | C1—C2 | 1.4067 (19) |
| C12—H12A | 0.9500 | C2—C3 | 1.363 (2) |
| C13—H13A | 0.9500 | C2—H2A | 0.9500 |
| Cl1X—C10X | 1.747 (6) | C3—C4 | 1.398 (2) |
| O1X—C7X | 1.259 (7) | C3—H3A | 0.9500 |
| O2X—C7X | 1.253 (14) | C4—C5 | 1.365 (2) |
| C7X—C8X | 1.519 (8) | C4—H4A | 0.9500 |
| C8X—C9X | 1.389 (13) | C5—C6 | 1.503 (2) |
| C8X—C13X | 1.395 (5) | C6—H6A | 0.9800 |
| C9X—C10X | 1.377 (17) | C6—H6B | 0.9800 |
| C9X—H9XA | 0.9500 | C6—H6C | 0.9800 |
| C10X—C11X | 1.388 (12) | ||
| O1—C7—O2 | 123.8 (9) | C10X—C11X—H11B | 121.4 |
| O1—C7—C8 | 117.2 (6) | C13X—C12X—C11X | 120.3 (3) |
| O2—C7—C8 | 118.9 (8) | C13X—C12X—H12B | 119.9 |
| C9—C8—C13 | 118.3 (6) | C11X—C12X—H12B | 119.9 |
| C9—C8—C7 | 121.2 (6) | C12X—C13X—C8X | 120.4 (3) |
| C13—C8—C7 | 120.5 (4) | C12X—C13X—H13B | 119.8 |
| C8—C9—C10 | 122.8 (10) | C8X—C13X—H13B | 119.8 |
| C8—C9—H9A | 118.6 | C1—N1—C5 | 122.95 (13) |
| C10—C9—H9A | 118.6 | C1—N1—H2N2 | 120.4 (14) |
| C11—C10—C9 | 117.1 (7) | C5—N1—H2N2 | 116.7 (14) |
| C11—C10—Cl1 | 124.2 (7) | C1—N2—H1N1 | 117.5 (14) |
| C9—C10—Cl1 | 118.7 (8) | C1—N2—H1N2 | 121.7 (14) |
| C10—C11—C12 | 121.2 (4) | H1N1—N2—H1N2 | 119 (2) |
| C10—C11—H11A | 119.4 | N2—C1—N1 | 117.63 (13) |
| C12—C11—H11A | 119.4 | N2—C1—C2 | 123.89 (14) |
| C11—C12—C13 | 120.1 (3) | N1—C1—C2 | 118.48 (13) |
| C11—C12—H12A | 119.9 | C3—C2—C1 | 119.04 (14) |
| C13—C12—H12A | 119.9 | C3—C2—H2A | 120.5 |
| C8—C13—C12 | 120.3 (3) | C1—C2—H2A | 120.5 |
| C8—C13—H13A | 119.8 | C2—C3—C4 | 120.93 (14) |
| C12—C13—H13A | 119.8 | C2—C3—H3A | 119.5 |
| O2X—C7X—O1X | 127.3 (10) | C4—C3—H3A | 119.5 |
| O2X—C7X—C8X | 117.5 (8) | C5—C4—C3 | 119.24 (15) |
| O1X—C7X—C8X | 115.2 (7) | C5—C4—H4A | 120.4 |
| C9X—C8X—C13X | 120.8 (6) | C3—C4—H4A | 120.4 |
| C9X—C8X—C7X | 117.9 (6) | N1—C5—C4 | 119.32 (15) |
| C13X—C8X—C7X | 121.3 (4) | N1—C5—C6 | 115.76 (13) |
| C10X—C9X—C8X | 116.4 (9) | C4—C5—C6 | 124.91 (15) |
| C10X—C9X—H9XA | 121.8 | C5—C6—H6A | 109.5 |
| C8X—C9X—H9XA | 121.8 | C5—C6—H6B | 109.5 |
| C9X—C10X—C11X | 124.5 (7) | H6A—C6—H6B | 109.5 |
| C9X—C10X—Cl1X | 118.1 (8) | C5—C6—H6C | 109.5 |
| C11X—C10X—Cl1X | 117.3 (7) | H6A—C6—H6C | 109.5 |
| C12X—C11X—C10X | 117.3 (4) | H6B—C6—H6C | 109.5 |
| C12X—C11X—H11B | 121.4 | ||
| O1—C7—C8—C9 | 169.3 (5) | C7X—C8X—C9X—C10X | 172.7 (6) |
| O2—C7—C8—C9 | −9.3 (8) | C8X—C9X—C10X—C11X | 6.5 (12) |
| O1—C7—C8—C13 | −11.7 (7) | C8X—C9X—C10X—Cl1X | −175.4 (5) |
| O2—C7—C8—C13 | 169.7 (6) | C9X—C10X—C11X—C12X | −4.3 (11) |
| C13—C8—C9—C10 | 4.3 (9) | Cl1X—C10X—C11X—C12X | 177.7 (4) |
| C7—C8—C9—C10 | −176.7 (6) | C10X—C11X—C12X—C13X | 1.0 (7) |
| C8—C9—C10—C11 | −5.7 (11) | C11X—C12X—C13X—C8X | −0.4 (6) |
| C8—C9—C10—Cl1 | 177.0 (5) | C9X—C8X—C13X—C12X | 2.8 (7) |
| C9—C10—C11—C12 | 3.9 (10) | C7X—C8X—C13X—C12X | −175.5 (3) |
| Cl1—C10—C11—C12 | −178.8 (5) | C5—N1—C1—N2 | −177.15 (15) |
| C10—C11—C12—C13 | −1.1 (7) | C5—N1—C1—C2 | 1.9 (2) |
| C9—C8—C13—C12 | −1.2 (6) | N2—C1—C2—C3 | 176.80 (16) |
| C7—C8—C13—C12 | 179.9 (4) | N1—C1—C2—C3 | −2.2 (2) |
| C11—C12—C13—C8 | −0.4 (6) | C1—C2—C3—C4 | 0.7 (3) |
| O2X—C7X—C8X—C9X | 2.7 (9) | C2—C3—C4—C5 | 1.2 (3) |
| O1X—C7X—C8X—C9X | −176.6 (5) | C1—N1—C5—C4 | 0.0 (2) |
| O2X—C7X—C8X—C13X | −178.9 (6) | C1—N1—C5—C6 | −179.36 (14) |
| O1X—C7X—C8X—C13X | 1.8 (6) | C3—C4—C5—N1 | −1.5 (3) |
| C13X—C8X—C9X—C10X | −5.7 (9) | C3—C4—C5—C6 | 177.75 (17) |
| H··· | ||||
| N1—H2 | 0.94 (2) | 1.69 (2) | 2.614 (7) | 168 (2) |
| N2—H1 | 0.86 (2) | 1.98 (3) | 2.832 (14) | 170 (2) |
| N2—H1 | 0.88 (2) | 2.06 (2) | 2.853 (11) | 150 (2) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H2 | 0.94 (2) | 1.69 (2) | 2.614 (7) | 168 (2) |
| N2—H1 | 0.86 (2) | 1.98 (3) | 2.832 (14) | 170 (2) |
| N2—H1 | 0.88 (2) | 2.06 (2) | 2.853 (11) | 150 (2) |
Symmetry code: (i) .